Variovorax paradoxus B4: VAPA_2c04960
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Entry
VAPA_2c04960 CDS
T02835
Name
(GenBank) putative outer membrane efflux protein, TolC family
KO
K12340
outer membrane protein
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd01501
beta-Lactam resistance
vpd01503
Cationic antimicrobial peptide (CAMP) resistance
vpd02020
Two-component system
vpd03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
VAPA_2c04960
09132 Signal transduction
02020 Two-component system
VAPA_2c04960
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
VAPA_2c04960
01503 Cationic antimicrobial peptide (CAMP) resistance
VAPA_2c04960
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpd02000
]
VAPA_2c04960
02044 Secretion system [BR:
vpd02044
]
VAPA_2c04960
01504 Antimicrobial resistance genes [BR:
vpd01504
]
VAPA_2c04960
Transporters [BR:
vpd02000
]
Other transporters
Pores ion channels [TC:
1
]
VAPA_2c04960
Secretion system [BR:
vpd02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
VAPA_2c04960
RTX toxin transporter
VAPA_2c04960
Multiple protein transporter
VAPA_2c04960
RaxAB-RaxC type I secretion system protein
VAPA_2c04960
Antimicrobial resistance genes [BR:
vpd01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump AcrEF-TolC [MD:
M00696
]
VAPA_2c04960
Multidrug resistance, efflux pump MdtEF-TolC [MD:
M00697
]
VAPA_2c04960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
Motif
Other DBs
NCBI-ProteinID:
AGU53056
UniProt:
T1XKI1
LinkDB
All DBs
Position
2:complement(499621..501030)
Genome browser
AA seq
469 aa
AA seq
DB search
MAVAPGPMRLRASLLVAAIALACAAPAARATDLLDVWRAAEQADLDHAVAREAHAAAMPR
RDQAAALWRPSVNVSASAGIATHETRTRGAQFSAPGSSPSSGVNFNTSIKDGTAGRWAIS
ASQPLYNPERRAQQQLLGLSADQADLEWQSARQTLMLRTAQRYFDLALAAESLRVLRLQR
DAVQRASTEAQDRFTLGATPVTDTYEAGARLAGIQAQVLAAETEVRLKRELLADSTGMPP
AALSARLPAGRSTDARPRPLDAWLLEAQAGNPDIRARQIATEAARQEASKFSLQSSVTVD
LVAQASRDRLSGSGDFGSAANRGTDRMIGVQISVPLYTGGMRSARQEEALRLADKAAAEA
DRSRQQTAQQVRSAWLGLSVGAERVQSLAQGVKASEARRDATHLGHEVGERTTLDVLNAE
NDAAAARLALVQARAGLLMDRLRLAALAGQLDDTMLRAVDEDLEPATPN
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggccgtcgcgcccgggccgatgcgcctgcgagcctcgctgctcgtggccgcgatcgcg
ctggcgtgcgccgcgcccgcggcgcgcgcgacggacctgctcgacgtgtggcgtgccgcc
gaacaggccgacctggaccatgccgtggcgcgcgaggcgcatgcggccgccatgccgcgc
cgcgaccaggcggccgcgctgtggcggcccagcgtcaacgtgagcgcctcggccggcatt
gcgacgcacgaaacccgcacgcgcggcgcgcagttctccgcgccgggctccagtccatcg
agcggcgtgaacttcaacacctcgatcaaggacggcacggcgggccgctgggccatctcg
gcgagccagccgctgtacaaccccgagcggcgcgcccagcagcagctgctgggcctctcg
gccgatcaggccgacctcgagtggcagtctgcccggcagacgctgatgctgcgcaccgcg
cagcgctatttcgaccttgccctggcggcggaatcgctgcgcgtgctgaggctccagcgc
gacgcggtccagcgggcctcgaccgaagcacaggaccgcttcacgctcggcgcgacgccc
gtgaccgacacgtacgaggcaggcgcacgcctggccggcatccaggcgcaggtactggcg
gccgagaccgaggtgcggctcaagcgcgagctgctcgccgacagcaccggcatgccgccc
gcggcgctgtcggcccgcctgccggccggccgctcgaccgacgcccggccgcggccgctg
gatgcgtggctgctcgaggcacaggccggcaatccggacatccgggcgcggcagatcgcc
accgaggccgccaggcaggaggcctcgaaattcagcctgcagtcttccgtcacggtcgac
ctcgtcgcccaggcctcgcgcgaccggctcagcggcagcggcgatttcgggtcggccgcc
aaccgcggcaccgaccgcatgatcggcgtccagatctcggtgcccctgtacacgggcggc
atgcgcagcgccaggcaggaggaggccctgcgcctggccgacaaggccgccgcggaagcg
gatcgcagccgccagcagaccgcgcagcaggttcgctccgcctggctcgggctgagcgtc
ggtgccgagcgcgtgcagtccctggcgcaaggcgtgaaggcgagcgaggcacggcgcgat
gcgacgcacctggggcacgaggtgggcgagcgcaccaccctggacgtgctgaacgccgag
aacgacgccgccgccgcccgcctggcgctggtgcaggcccgtgccgggctgctgatggac
aggcttcgcctcgcggcgctcgccgggcagctggacgacaccatgctgcgcgccgtcgac
gaggacctcgagccggcaaccccgaactga
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