KEGG   Variovorax paradoxus B4: VAPA_2c06250
Entry
VAPA_2c06250      CDS       T02835                                 
Name
(GenBank) type III secretion outer membrane pore, YscC/HrcC family
  KO
K03219  type III secretion protein C
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    VAPA_2c06250
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vpd02044]
    VAPA_2c06250
Secretion system [BR:vpd02044]
 Type III secretion system
  Type III secretion core apparatus
   VAPA_2c06250
SSDB
Motif
Pfam: Secretin Secretin_N T3S_SPI-1_N0
Other DBs
NCBI-ProteinID: AGU53184
UniProt: T1XLM3
LinkDB
Position
2:650994..652754
AA seq 586 aa
MRVPHLKALCRRSLALWGCAALVLLAAPSPAHAAELRWSNRPFQIVANEKPLADFLRELA
SSQNVTAVIDPKVVGAISGKFAGSALTTLNSVCAVNGLTWYFDGAFLFVDLAADAKSEVL
PIAAENAGRIAETLVRLHISDERYPLSISERDASVYVTGPRRYVEMVRQAVKLADQKSAM
AEGAEIRLFPLRYAWASDFRINRSGKDTVIPGVANVLRSLYGRGNGNSPAGSPGARGMSG
GMSLGPNRQIKLRSGETINAPKVEIAGAGGDAVAQGGISNLPGGELPQFQADTRMNAVLV
RDMPDRMAQYAKLIESMDVRPRLVEIEVTIMDISSDTLNSLGIDWRLHGRHADFQTGRGD
RGQLTWGGSGSEAGQIGSADGSGNPLTPLGGMFTAAIGNSARNYLLARVTALATNGSANF
VARPKVMTLDNTEAVLENLSEFYVRVDGFQDAGLFSITAGTAVRVTPLVIDEKASRGVMM
SIDIVDGDLSPMSVDKIPIVRRRTVNTQALVEEGASLLIAGYSSEEKSNAVTGVPLLKDI
PGVGGLFRSTEKKQSNMERFYLLTPRLVLPGATANVPTLPLPEVGG
NT seq 1761 nt   +upstreamnt  +downstreamnt
atgcgcgtcccgcacctgaaagccttgtgccgacgcagcctcgcgctgtggggctgcgcc
gcgctggtgctgctggccgcaccgtcgccggcccacgcggccgagctgcgctggagcaac
cggccgttccagatcgtcgccaacgagaagccactggccgacttcctgcgcgagctggct
tcgtcgcagaacgtcacggcggtgatcgaccccaaggtggtcggcgccatcagcggcaag
ttcgccggctcggcgctgacgacgctcaacagcgtgtgcgcggtcaacgggctgacctgg
tacttcgacggcgccttcctgttcgtcgacctggccgccgacgcgaagagtgaagtgctg
cccatcgcggccgagaacgcggggcgcatcgccgagacgctggtgcgcctgcacatctcc
gacgagcgctatccgctgagcatcagcgagcgcgacgccagcgtgtacgtgaccgggccg
cgccgctacgtggaaatggtgcgccaggcggtgaagctcgcggaccagaagagcgcgatg
gccgagggcgccgagatccggctctttccgctgcgctacgcctgggcgtcggacttccgg
atcaaccgctccggcaaggacacggtcatccccggcgtggccaatgtgctgcgcagcctc
tacggccgcggcaacgggaattcgcccgcgggcagccccggtgcccggggcatgagcggc
ggcatgtcgctggggccgaaccggcagatcaagctgcgcagcggcgagaccatcaacgcc
cccaaggtggagatcgccggggccggcggcgatgctgtcgcgcagggcggcatctcgaac
ctccccggcggcgaactgccccagttccaggccgacacgcgcatgaacgcggtgctggtg
cgcgacatgcccgacaggatggcccagtacgcgaagctgatcgaatcgatggacgtgcgg
ccgcggctggtcgagatcgaggtgaccatcatggacatcagctccgacacgctcaacagc
ctgggcatcgactggcgcctgcatggccggcatgcggacttccagacgggccgcggcgat
cgcggccagttgacctggggcggctcgggcagcgaggccgggcagatcggcagcgccgac
ggctcgggcaatccgctcacgccgctgggtggcatgttcaccgccgccatcggcaacagc
gcgcgcaactacctgctggcccgcgtgaccgcgctggccaccaacggcagtgcgaacttc
gtggcccgtccgaaggtgatgacgctggacaacacggaggccgtgctggagaacctcagc
gagttctatgtgcgggtggacggcttccaggacgcgggcctgttcagcatcacggccggc
actgccgtgcgcgtgacgccgctggtcatcgacgagaaggcttcccgaggcgtgatgatg
tccatcgacatcgtcgatggcgatctcagcccgatgtcggtcgacaagatcccgatcgtg
cgccgccgaaccgtcaacacgcaggcgctggtggaggagggcgcgagcctgctgatcgcc
ggctattcgtccgaggagaagagcaatgccgtcacgggcgtgccgctgctcaaggacatt
cccggcgtcggcgggctcttcaggtcgaccgagaagaagcagtccaacatggagcgcttc
tacctgctgacgccgcggctggtgctgcccggcgccacggcgaacgtgccgaccttgccc
ttgccggaagtgggaggctga

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