Variovorax paradoxus B4: VAPA_2c12620
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Entry
VAPA_2c12620 CDS
T02835
Name
(GenBank) putative RNA methyltransferase
KO
K06941
23S rRNA (adenine2503-C2)-methyltransferase [EC:
2.1.1.192
]
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpd03009
]
VAPA_2c12620
Enzymes [BR:
vpd01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.192 23S rRNA (adenine2503-C2)-methyltransferase
VAPA_2c12620
Ribosome biogenesis [BR:
vpd03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
VAPA_2c12620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
Radical_SAM_2
X-Tfes_XVIPCD
Motif
Other DBs
NCBI-ProteinID:
AGU53815
UniProt:
T1XNW6
LinkDB
All DBs
Position
2:complement(1288234..1289271)
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AA seq
345 aa
AA seq
DB search
MRIHELKQRLREAGAGPSHAQRILRLWSHALPRNSGRRLPASFFPSSLLAALPAIEAELA
GLARIHAVHPGADGSERLLVALADGQTVESVLLPRDGLCVSSQVGCAVGCRFCMTGRDGL
LRQVGSAEIIAQVALARMRRPVRKVVFMGMGEPAHNLDNVMEAIELLGTVGNIGHKNLVF
STVGDPRAFERLQQARVRPALALSLHTTKADLRKKLLPRAPNMTPEELVGAGERYARATG
YPIQYQWTLLEGVNDGPEEIEGIVRLLSGKYGVLNMIPFNAVDGVAFSRPSWERCEQMAR
TLHQRGILTKLRQSAGQDVDGGCGQLRARAAEAAEMRVVPIRPLM
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatccacgaactgaaacaacggctgcgggaagccggcgcgggccccagccacgcg
cagcgcatcttgcggctgtggtcccatgcgctgccgcgaaacagcggccggcgcctgccg
gcgagcttctttccgtcgtcgctgctggccgccctgcccgccatcgaagccgagcttgcg
ggactcgcgcgcatccacgcggtgcatcccggcgccgatgggtccgagcggctgctcgtc
gcccttgccgacggccagacggtggagagcgtgctgctgccgcgcgacgggctgtgcgtc
tcgtcgcaggtgggctgcgcggtcggatgccggttctgcatgacggggcgcgacggattg
ctgcgccaggtgggaagcgccgagatcattgcccaggtcgccctcgcgcgcatgcgccgg
ccggtgcgcaaggtggtgttcatgggcatgggcgaaccggcccacaacctggacaacgtg
atggaggccatcgagctgctcggcacggtgggcaacatcggccacaagaacctggtgttc
tccacggtgggcgatccgcgcgcgttcgagaggctgcagcaggcacgcgtcaggcccgcg
ctggcgctctccctgcacacgaccaaggccgacctgcgcaagaagctccttccgcgcgcg
ccgaacatgacgcccgaggaactggtcggcgcaggcgagcgctacgcacgggccaccggc
tacccgatccagtaccagtggacgctgctggaaggcgtcaacgacgggccggaggagatc
gaaggcatcgtgaggctgctctccggcaagtacggcgtgctgaacatgatcccgttcaac
gcggtggatggcgtggcgttcagccgcccgtcgtgggagcgctgcgagcagatggcgcgc
acgctgcaccagcggggcatcctgacgaagctgcgccaatcggccggccaggatgtcgac
ggcggatgcggccagctgagggcgcgcgcagccgaagcagccgaaatgcgggtggtgccg
attcgtccgctcatgtga
DBGET
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