Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_06885
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Entry
M634_06885 CDS
T02761
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M634_06885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpf03400
]
M634_06885
Enzymes [BR:
vpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M634_06885
DNA repair and recombination proteins [BR:
vpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M634_06885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Helicase_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGQ90504
LinkDB
All DBs
Position
I:complement(1412397..1415858)
Genome browser
AA seq
1153 aa
AA seq
DB search
MTKATILSVTNPTERGDKKQLGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAE
IEQFTDQPVSLFPDWETLPYDNFSPHQEIISDRIARLYQLPNQRGGVTIVPVSTVLQRQS
PREFLLQHTLMVKTGDNFSLENLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSAD
PYRIDFFDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEFPTTKEAIEDFRTRWRTQFEAR
REPESIYMQVTKGTWPAGIEYWQPLFFDHTETLFDYLPEDSQLITYGDIEAAVDTFLNDV
EYRYDQKKIDPLRPLLAPHDLWLKKDELFAHFKQLPQAQLSLEKVVKRAGRQNLAVQTLA
ELGVQQQNKEPLSRLRQFSEQFTGKIIFSVESEGRREALTELLQGIKVRPVVQESLYHAL
ESDHRFTLILGSAEHGFIHDELNFALICESDLLGDRVIQRRRKDKKAVNSDTVIRHLAEL
KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEYQNDAKLYVPVSSLNLISRYSGGAE
ETAPLHKLGGEAWSKARRKAAEKVRDVAAELLDVYAKRELKPGFKFALDRGQYATFKATF
PFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSD
IKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVREREESVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKLIPEAR
ITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDDLLREQTEVELRIPALLPDDYI
PDVNTRLSMYKRIASVSDSDELSELKVELIDRFGLLPDAAKNLLAVSELKFAAGSIKAKK
IEAHDKGGFIEFYPDADINPAYLVKLLQSQPQKFAMEGPTKLKFSVPLADRRKRIQFVQD
LLNDFKQNLLPTS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaagcaacgatactttccgtcaccaatccaactgagcgtggcgacaaaaaacaa
cttggcaacttacccggtgcagcgctgccactcgccattgccgaactggccaagcagcat
tcaagtcactcactactggttgtgccagatccgcagatcgcgttgaaactgcaagcagaa
atcgaacagtttaccgaccaaccggtaagccttttccctgattgggaaacgttgccatac
gacaatttttctccgcaccaagagatcatttctgaccgtattgctcgcctataccaactg
ccaaatcaacgtggcggtgtcactatcgtgccagtcagcactgttcttcagcgccaatct
ccgcgagaatttttgttacagcacacactaatggtcaaaacaggcgataatttctcgcta
gaaaacctgagagtgcaactagagaactcgggttaccgtcacgtagaccaagtgtttggg
ccgggtgaatacgcgagccgaggttcgattctcgacttattcccgatgggcagtgcagat
ccttaccgcattgactttttcgatgatgaaattgacaccattcgcactttcgatccagaa
aaccagcgttctatcgaagatattcagcaaatccaattgctgcctgcgcatgaattccca
acgacgaaagaagcgattgaagatttccgtactcgttggcgcacccagtttgaggcgaga
cgcgagccagaatccatctacatgcaagtcaccaaaggaacgtggccggcaggcattgaa
tactggcaaccactgttcttcgaccataccgaaaccctgttcgactacttacctgaagat
tcgcagctgatcacatacggcgacattgaagcagctgtcgacacattcttaaatgacgtc
gaatatcgctacgatcaaaagaaaattgatcctctgcgtccacttcttgccccacatgat
ttgtggctcaagaaagacgaattgtttgcacacttcaaacaacttcctcaggcacagctc
agcctagagaaagtagtgaaacgtgctggccgccaaaacttagcggtacaaacacttgca
gaacttggcgttcaacagcaaaacaaagagccattatctcgtttgcgccaattcagcgaa
caatttacgggcaaaatcatcttttcggtggaatcggaaggtcgacgcgaagccctgact
gagcttctgcaaggcatcaaagttcgcccagtggtacaagaatcgctgtatcacgctttg
gagtcagaccaccgtttcacgttgattcttggttcagcagaacacggctttattcatgac
gagctgaatttcgcgctgatatgcgaaagtgacttgcttggcgatcgcgtaattcaacgc
cgtcgcaaagacaaaaaagccgtcaacagtgacactgttattcgccaccttgccgagctg
aaaccaggccaacctgttgttcatattgaccacggcatcggccgctacatcggtctgcaa
acccttgaagcgggaggaatgaaaaccgagtatgtgacgcttgaatatcaaaacgacgcc
aaactttatgttcccgtatcctcgctaaacttgatcagccgttactctggcggcgctgaa
gaaacggctcctctgcacaaacttggcggtgaagcgtggtcgaaagcacgtcgaaaagcg
gctgagaaagtacgcgatgttgcagcagagctacttgatgtatacgcgaagcgtgaacta
aaaccgggctttaaatttgccttagatcgtggccaatacgcgaccttcaaggcaacattc
ccgtttgaagaaaccgatgatcaagccatggcaatcaacgcggtactttccgatatgtgc
caagcaaaagccatggatcgcttggtgtgtggtgacgttggctttggtaaaacagaagtt
gccatgcgtgcggcctttgttgctacggacaacagcaaacaagttgccgtactcgtgcca
acaaccctgcttgctcagcagcattttgaaaacttccgtgaccgcttcgcgaacttgcca
atccgagtcgaggtgctttctcgcttcaaatcagccaaagagcaaaaagtgattttgcaa
gatgttgcggatggcaaagttgatatcgtcgtcggtacgcacaaattgctctccagcgac
atcaaattcaaagatttgggtttgctgattgtcgacgaagaacatcgcttcggtgttcgt
caaaaagagaaagtcaaagcgatgcgcgccgatgtggacattcttaccctaacggcaacg
ccgattcctcgtacgctgaacatggcaatgagtggtatgcgtgatttgtcgatcatcgcc
acaccaccagcacgtcgtttagctattaagacatttgttcgcgaacgtgaagagtccgtg
gtgcgagaagccgtactgcgtgaaatcatgcgtggtggtcaggtttacttcctgcacaat
caggttgaaaccattgaaaaaacggcagaagacttacaaaaactcattccagaagcccgt
attaccgtggcacacggccaaatgcgtgaacgcgaactggaacgtatcatgaatgatttc
taccaccagcgctttaacgtgttggtgtgtaccaccatcattgaaacgggtatcgacgtt
ccgacggccaacacaatcattatggatcgtgctgacaaccttggcttggcgcaactgcat
caattgcgtggccgtgttggtcgctctcaccatcaagcttatgcttatttgttaacgcca
catccaaaagcaatgaccaaagatgccattaaacgtctcgatgccattgcttcactggaa
gacttaggcgcgggctttactctggcaacgcacgatttggaaattcgtggcgctggtgaa
ctgcttggtgacgaacaaagtggtcaaattcaatcggttggttttacactgtatatggaa
atgcttgaacaagcagtcgaagctttgaaagaaggtaaagagccatcattggatgatctg
cttcgtgaacaaacagaagtagaactgagaatccctgcgctactgcctgatgattacatt
ccagacgtcaatacgcgtctgtcgatgtacaaacgaattgcgagtgtgagcgacagcgat
gagctatccgaattaaaagttgagctgatcgaccgctttggcttacttcctgatgccgcg
aagaacttactggctgtctcagaattgaaatttgccgcaggtagtattaaagcgaagaag
atagaagcccatgataaaggtggatttatcgagttttaccctgatgctgacataaatcca
gcgtatttagttaaactcctgcaatcacagccgcaaaaatttgcaatggaaggtccaact
aagctcaagtttagcgtaccattggcggaccgacgtaaacgcattcagtttgtacaagac
ttactgaatgattttaaacagaatttattaccaacgagctaa
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