Vibrio paracholerae: SA104470976_01598
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Entry
SA104470976_01598 CDS
T08432
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vpl
Vibrio paracholerae
Pathway
vpl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SA104470976_01598 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpl03400
]
SA104470976_01598 (mfd)
Enzymes [BR:
vpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SA104470976_01598 (mfd)
DNA repair and recombination proteins [BR:
vpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SA104470976_01598 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
SYZ81708
LinkDB
All DBs
Position
1:1737319..1740786
Genome browser
AA seq
1155 aa
AA seq
DB search
MTTHSLLSLFSAQGAGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHE
VEQFSHSEVALFPDWETLPYDNFSPHQDIISDRISRLYQLPSLTHGITIVPVSTLLQRQS
PRDFLLQHTLIVKRGDHFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD
PFRIDFFDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEAR
REPESVYSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDV
DYRYDQRNIDPLRPLLPPNELWLRKDELFAHFKALPQVQLSSSPIELRAGRMNAQVQPLP
TLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLAC
QQTEKYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLA
ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGG
AEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDSEQYATFKA
TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL
VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS
SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI
IATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPE
ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQ
LHQLRGRVGRSHHQAYAYLLTPPPKAITKDALKRLEAIASLEDLGAGFTLATHDLEIRGA
GELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEE
YIPDINTRLSMYKQIASVASEDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKV
RKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFV
ADMLKNFQQNVLPAR
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgactacacactctttactctctctgttttcggcgcaaggtgccggagacaaaaaagcc
atcggtaatttacacggcgcaagtttagcgctggccattgcggaactcgccaatgctcat
acgagccatacgttgctcgccgtgcccgatccacaaactgcgctcaaattgctacacgaa
gtggaacagtttagccacagcgaagtggcgctcttccccgattgggaaacgctgccctac
gataatttttcaccccatcaggacatcatttctgatcgtatttcgcgtttgtatcagctc
ccaagcttaacgcacggtatcacaattgtcccggtcagtaccttgcttcagcgccagtca
ccacgtgactttttgttgcagcacaccttaatcgttaaacgtggcgatcacttttcactg
gataaactgcgcttgcagttagaaaacagcggctatcgccatgtcgatcaggtctttggc
cccggtgaatacgccagtcgcggttcgattcttgatctcttcccgatgggcagtagcgac
ccattccggatcgatttctttgatgatgaaatcgacaccattcgcacctttgatccagac
aatcagcgctcaatcgctgaaatggatgaaattcgcctgctgcccgcccatgagtttccg
acgacggccgcggcgatcgaagagtttcgtaaccgctggcgacagcgttttgaagcgcgc
cgcgagccggaatcggtttacagccaagtctctaaaggcacttggccggcagggattgag
tattggcagccactcttttttgagcacagcgagactctgtttgattacctgcccgccaac
agccagcttttggtggttggcgagctggaaaaagccatcgaccagttcttgaccgatgtc
gattatcgctacgaccaacgcaatatcgacccactgcgcccactgttgccgcccaatgag
ttgtggctgcgtaaagatgagctgtttgcgcattttaaagcgctgccacaagtgcaacta
agcagctcacctatcgagctgcgtgccggtcgaatgaatgcgcaagtgcaacccctaccc
acattggccgttgagcatcaaaataaagagcctttggcggcactgcgccaatttagcgaa
caatttaccggcaaaatcattttctcagtcgaatcggaaggtcgccgtgaagcgctactg
gagttgttacagcgcattaaattgcgcccgcaaagccaaaatgatttcagccttgcgtgc
caacaaacggaaaaatactcactggtgctcggctcagcagagcgcggatttatctatggt
gataaccaagttgccttaatttgtgagagcgatttactgggcgatcgggtgattcaacgt
cgccgcaaaaaagatcgcaaaaacgtcaccaacagtgatgcggtgatccgcaaccttgcc
gaactcaaaccgggacaacccgttgtccatattgatcatgggatcggacgttacttaggc
ttacaaacccttgaagccggtggcatggtcagcgaatacgtgatgctggagtatcaaaac
gaagccaagctgtatgtgccggtttcgtcactgaacctgatcagccgctactccggtggc
gcagaagaagccgcccaattgcataaattagggggtgaagcgtgggtcaaagcgcgccgc
aaagcggcggaaaaagtgcgcgatgtcgcggcagaacttttggatgtgtatgccaagcgc
gaaatcaaaccgggctttaaattccatctcgacagtgaacaatacgcgaccttcaaagcc
accttcccgtttgaagaaaccgatgaccaagcgatggcgattaatgctgtgctatccgac
atgtgccaagccaaagccatggaccgtttggtgtgtggtgacgttggctttggtaaaacc
gaagtggcaatgcgcgccgcgtttgtcgcgaccgataatggcaagcaagtcgccgtgtta
gtccctacaactctactggcgcagcagcattttgaaaatttccgcgaccgctttgctaac
ttgccgatccgcgtcgaagttctgtcacgctttaaatcagccaaagagcaaaagcaaatc
ctacaagatgtggcggacggtaaagtcgatattctggtcggtacccataagttgctctct
agcgaaatccgttttgctgatcttggcttgttgattgtcgatgaagagcaccgtttcggg
gtgcgccaaaaagaaaaagtcaaagcgatgcgtgccgatgtggatattctgactctcact
gccacgccgatcccacgtacactcaacatggcgatgagtggaatgcgtgatctgtcgatt
attgccacccctccagcgcgccgtttagccatcaaaacctttgttcgtcaaagtgaagat
agtgtgatccgtgaagccgtactgcgtgaaattatgcgcggtggtcaggtgtactttctg
cataatcaggttgaaaccatcgataaagtggctgcagatttggaaaaactggtgccagaa
gcgcggattaccgtcgctcacggacagatgcgtgaacgtgagctggaaaaagtgatgaac
gatttctaccaccagcgtttcaatttgctggtgtgtaccacgatcatcgaaaccggtatc
gatgttccgaccgcgaataccatcatcatggatcgcgctgacagcttaggtttagctcag
ttgcaccagttacgtggacgtgtcggtcgttcgcatcaccaagcctatgcttacctgcta
acgccaccgcccaaagcgattaccaaagatgctctcaaacgcctagaggcaattgcctct
ttagaagatttgggggccggctttactctcgccacgcacgacctagaaattcgcggggcc
ggtgaattgttaggcgaagagcaaagtggccagattcagtcggtcggttttactctgtat
atggaaatgctcgaacaagcggtcgaagccctaaaatcaggcaaagaacctgcgctggat
gatttactgcgtgagcagaccgaagtcgaaatgcgcctaccagccttactgccggaagag
tacatccccgatatcaatacgcggttatccatgtacaaacagatcgccagcgtagcgagt
gaagacgaattggctgaactcaaagtcgaattgattgatcgctttggtaaattaccggac
gccgcgttaaacttactcgccattgccgaactgaaactcaatgctatgcgcctaaaagtg
cgtaaaattgaggcgcatgagcgtggcggatacgtagagttctatcccaatgctgacatt
aacccggtgtttttggttaaactgctgcaatcgcaaccaaagttactggcgatggatgga
ccaaccaaattgaaatttactttgcctttggttgaacgcagtgcgcgcattcaatttgtc
gctgacatgttgaagaatttccagcaaaatgtactacctgctcggtaa
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