Vermiphilus pyriformis: KG892_04205
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Entry
KG892_04205 CDS
T07973
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vpm
Vermiphilus pyriformis
Brite
KEGG Orthology (KO) [BR:
vpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KG892_04205 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpm03400
]
KG892_04205 (ligD)
Enzymes [BR:
vpm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KG892_04205 (ligD)
DNA repair and recombination proteins [BR:
vpm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KG892_04205 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
ALS_ss_C
Motif
Other DBs
NCBI-ProteinID:
UNE35168
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Position
871324..872184
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AA seq
286 aa
AA seq
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MKVGNRIIEITHPDKIMFSSPTITKQEVIDYYHAIAKYMIPFLKNRVLTVQAFPEGIMHK
GFYQKNVQSHYPSWIPTITIDKKDGGYTQYAIGTNQAELVYLANQNCVVFHPWLSRVDKL
DFPDKIVFDLDPSTNDFSAVQHAALVAKRVLEECGLVPFVMTTGSRGMHVVTPLRRLYTF
EQVSYIARVIAERIVSYDPQTFTVEIRKDARKSKVFIDSLRNNAGATAVCPYSLRPRSGA
PVATPITWAQATDTTLTSQQYNLHTVGHKLKNMVVLGRILSATHRH
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtaggtaatcgtataattgaaataacacaccctgacaaaattatgttttccagt
cctactatcactaaacaagaagtaatagattactatcatgctattgcaaaatatatgatt
ccttttttaaaaaatcgagttttgactgtccaagcatttcctgaaggaattatgcataaa
ggcttttatcaaaaaaatgttcaatctcattatccttcctggatacctacgattactatt
gataaaaaagatggcggatatacacaatatgcaattggcactaatcaagcagagctcgtg
tatttggcaaaccaaaactgtgtggtatttcatccgtggcttagccgggtagataagtta
gattttcccgacaaaattgttttcgatcttgacccatcgaccaatgatttcagtgctgtt
caacatgccgcacttgttgccaagcgcgtacttgaagaatgtgggttggtaccttttgtc
atgaccactggctcgcgcggtatgcacgtggtaactccattgcgccgcttgtataccttt
gagcaagtttcttatattgcacgcgttattgcagaacgtatagtgtcttacgatcctcaa
acttttaccgtagaaattcgcaaagatgcaagaaaatcaaaagtgtttatagatagttta
cgcaataatgcaggtgctactgccgtatgcccttactcactgcggccacgttcaggagct
cctgtggctacacctattacatgggctcaagcaactgacacaacattaacatcgcaacag
tacaatttgcatacggtaggtcataagttaaaaaatatggttgtgcttggaaggatatta
agcgccacgcacagacattag
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