Virgibacillus dokdonensis: A21D_01871
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Entry
A21D_01871 CDS
T05261
Symbol
ykoU
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vpn
Virgibacillus dokdonensis
Pathway
vpn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vpn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A21D_01871 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpn03400
]
A21D_01871 (ykoU)
Enzymes [BR:
vpn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A21D_01871 (ykoU)
DNA repair and recombination proteins [BR:
vpn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A21D_01871 (ykoU)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AUJ24952
UniProt:
A0A2K9IZ08
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Position
complement(2011231..2013030)
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AA seq
599 aa
AA seq
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MKVMKPIPTRDIPRGNAWLYEVKYDGYRCTLQWRKDSIQLRSKNHNDLSKQFPEIITACL
QVQGQVESHLPLMLDGELVIINQPYQANFDWMQKRARMQAEASIQSASKERSACLMAFDI
LQEQGNALLSTPLEERKNILKTLLSHQLFKDKIMYVPSYSDPDQLWEKIFTHLGEGMIAK
RKHSTYKQGKQHQDWYKIKNWRSISGFLTAYDGDNDYFQVGVYKNNHIISIGKCKHGLSQ
KDFSIVKQLFQTKGKLENKTYTLPPAICATIHSLDLYKQELREPAFQKILAHARPEEMTW
KKLEFAQAMFPKEIDITNADKLFWEGLNYTKADLLLHIRQIAPYMLPFLQQRALTIIRAP
DGIEGEHFFQKHLPSYAPPFMARQTHQGKEIITCETLKDLIWLTNHGTIEFHTPFQSLTA
RTPEEIVFDLDPPNRDRFDLAIHAALNMKHVFDELQLTSFVKTSGNKGLQIYIPIPSGSM
TYKQTALFTEAIARTLENAFPALFTTERLKEKRKGRLYIDYVQHGKGKTIIAPYSPRKNA
EATIAMPLYWEEITNDLSPKSFTIKNAVELVKQRGCPWRAYKAVKKSQNLTEILTFLGT
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcatgaaacccatacctacaagagatattccccgaggtaatgcatggttatat
gaggtaaagtatgatggttaccgttgtacactacaatggcgaaaagatagtattcaattg
cgaagtaaaaatcataatgatttaagcaagcaatttccagaaatcattacagcttgttta
caagtccaaggccaagtggaatctcatttaccactgatgttagatggtgagcttgtcatc
ataaaccagccatatcaagctaattttgattggatgcaaaaacgcgcacggatgcaagca
gaagctagtattcaaagcgcatccaaagaacgctctgcttgtttaatggcttttgatatt
ttacaggaacagggaaatgctttgttatccactccattagaggaacgcaaaaatatttta
aaaacgctgctatcccaccaactatttaaagacaaaataatgtatgtgcctagctatagt
gatccggatcagctttgggagaaaattttcacacacttaggagaaggaatgattgccaaa
cgcaaacatagcacatataagcaaggaaagcagcaccaggactggtataaaattaaaaat
tggcgctcaataagtgggtttttaactgcgtatgatggggataatgattatttccaagtt
ggcgtgtataaaaataatcacattatttcgattggtaaatgtaagcatggtttatcgcaa
aaagatttttcgattgtaaaacaattgtttcaaacaaaaggaaaactcgaaaacaaaacg
tatacactcccacctgccatttgtgctacgatccatagccttgatttatacaaacaagaa
ctacgtgaaccagcatttcagaaaatacttgcccatgcacgtccagaagaaatgacgtgg
aagaagcttgaatttgctcaagctatgtttccaaaggaaattgacataacaaatgcggac
aaactattttgggaagggctaaactatacaaaagcagacttattacttcatatacgccaa
atagcaccatatatgttgccatttttacagcaacgggcgctcaccattatccgtgcacct
gatgggatagaaggagaacatttcttccaaaagcatttaccaagctacgcgcctccattc
atggcaagacaaacacatcaaggaaaagaaatcattacttgcgagactttaaaagatctt
atttggttaaccaatcacggaacaatcgaattccatacaccatttcaaagccttacagca
cgtacaccagaagaaatcgtctttgatttagacccgccaaatagagaccgttttgattta
gctatccatgcagctttaaacatgaagcatgtttttgatgagttacagctaacttccttt
gttaaaacgtctggtaataaagggttgcaaatctacatccctatcccctctggtagcatg
acttataaacagactgctttgtttacggaagcgatagcacgtacgttagaaaatgcgttt
ccagcactgttcacgaccgagcgtcttaaggaaaaacgaaaaggtaggctctatattgac
tatgtacagcatggcaaagggaaaacgattatagcaccgtattcaccgagaaaaaacgca
gaagctaccatcgcaatgcctttatactgggaggaaataacgaacgacctttccccaaaa
agctttacgataaaaaatgctgtggagcttgtcaaacaacgcggatgtccatggcgagct
tataaagcagttaaaaaaagccaaaatctcacagaaattttgacttttttaggaacttag
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