Veillonella parvula: Vpar_1362
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Entry
Vpar_1362 CDS
T01130
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vpr
Veillonella parvula
Pathway
vpr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Vpar_1362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpr03400
]
Vpar_1362
Enzymes [BR:
vpr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Vpar_1362
DNA repair and recombination proteins [BR:
vpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Vpar_1362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
DEAD
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
MFD_D3
SecA_DEAD
DAP3
Motif
Other DBs
NCBI-ProteinID:
ACZ25040
LinkDB
All DBs
Position
complement(1555182..1558478)
Genome browser
AA seq
1098 aa
AA seq
DB search
MDNTLTKLLSQNPSFVDGLNAFQRKGKSVIYGLSGSQKSFLLSQSFSAGLTKPVVIVVHD
KDHKEMWERDLAFFMPNAPVLSFPTTDHVDFTTVARSLEVQGAQMRALALLAWQEPAVVI
ANAEEVTQYVVSPHYLKGQSLHFALNDAIERDVALEQLVTIGYERVDQVEQRGHFAVRGD
ILDIYPVNSDHPIRIEFFGDEIDTLRFFSVENQRSIEQIESYTVTPFFLGKSDADSTLLS
YVKEGTLIYDEPGRIQEALKKFLKEDPTHRKNHCDWNELQRTVDARNQVAFTFMQQRSIG
LTGFNPIGIQGKTMTSFERQIPLLTDEIKQWHRLHHQVVIVLNNQQRREGIERALEGEHI
VFTHSDTWIAKPNTVIILNGLLTDGFELPNSHLVVVVEGNIYGQQKRKLRNKPKKGQEIN
YFTDLTPGDYVVHSMHGIGKYIGLKTIETEGIHRDYIEIAYAGTDKLFLPANNLDQLQKY
IGNEGDVPRIHKMGGRDWAKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPWQQE
FEDAFPYEETEDQLQATAEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQV
AVLVPTTVLAQQHFQTFLNRFAPFGVKVDVLNRFRTTSEKKQILKGVEDGSIDILIGTHS
LLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVRE
MSVINTPPEERLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELLESA
LPGLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLG
LSQLYQMRGRVGRSRRRAYAYFMYRPDKILSEAAEKRLKAIEEFTELGAGFKLAMRDLEI
RGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVERDVSIDPAIDLEVDAFIDDA
YIKDSARKISVYQRLLHIKSKEQLDDMTDELIDRFGTPTDPVDRLLRIAQIKEQARLLGI
KSVVRRDKQLTIHWHDDSKMADWDMGAVPEDLWKKMKFMDTKPATLYVSLNGMKGSILTI
TEAVIKALSHKSPTKEGL
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggataatacattaacaaaactgctttcacagaacccatcctttgtggatgggctaaac
gcatttcagcgaaaggggaagtcagtcatatatggtcttagcggatctcaaaagagtttc
ctcttaagtcaatctttttctgcaggtcttacaaaacctgtagtcatcgtagtccatgat
aaggaccataaggagatgtgggaacgggacttagcttttttcatgcctaatgcaccagtc
ttatcatttcctacaacagatcatgtagactttacgactgtggctcgcagtcttgaagtc
caaggtgcgcagatgcgagcattagcactgttggcgtggcaagagccggcagtagtcatt
gccaatgctgaagaggttacacagtatgttgtatcgcctcattacttaaaggggcaatcg
ttgcattttgctttaaatgatgcaattgaacgtgatgtagcccttgaacagctcgtaaca
attggatatgaacgcgtagaccaggtggaacaacgtggtcattttgctgtgcgtggagat
attttggatatttatcctgtaaatagtgatcatccgattcgtattgaattctttggcgat
gagatcgatacattgcgtttcttctccgttgagaatcaacgttccattgagcaaattgaa
tcctacacggtgacgcctttctttcttggtaaaagtgatgcggacagtactttattatct
tatgtgaaagagggcactctaatttatgatgagcctgggcgtattcaagaggcgttaaag
aaattcttaaaagaagatcctacacatcggaaaaatcattgtgattggaatgaactacaa
cgtactgtagatgctaggaatcaagtggcttttacatttatgcaacaacgctctatcggt
ctcactggatttaaccctatcggtattcaagggaagacgatgacgagttttgagcgtcaa
attccactattaacagatgaaattaagcaatggcatcgtttacatcatcaagtggtgata
gtactaaataatcagcaacgacgagaaggtattgagcgtgcccttgaaggggagcatatt
gtatttactcatagtgatacatggattgctaagcctaataccgttattattttaaatggg
ttattaacagatggctttgaattgcctaatagccatcttgtggttgtggtagaaggcaat
atttacggacagcaaaagcgcaagcttcggaataagcctaaaaagggccaagaaatcaat
tatttcacggatttaacccctggtgactatgttgtacatagtatgcacggtatcggtaag
tatattggtcttaaaacgatagaaacggaaggcatccatcgggactatattgaaatcgct
tatgctggaacggataaattgttcttacctgcaaataatttagatcagttacaaaaatac
atcggcaatgaaggtgatgtgcctcgtattcataagatgggtggccgtgactgggctaaa
gttgttacaaaggcaaaaaaatccattgatgatttggcagataagctcgttgagatatat
gcacaacgagaaatcacagaaggctttgcattcttgccggatcaaccatggcagcaagag
tttgaagatgcgttcccatatgaggagacggaagaccagttacaggctacggcggaaatt
aaagaatctatggaacgacctgttcctatggatcgcctgctcgctggtgatgtaggattt
ggtaaaacggaagtggctatgcgcgccattttcaaggccgttatgagcggaaaacaagtg
gcagtacttgtaccaactacggttttagcacagcaacatttccaaacttttttgaatcgc
tttgctccatttggggtaaaagtagatgtgcttaatcgattccgaactacatcagagaaa
aaacaaattcttaaaggcgtagaggatggatctattgatattctcattggaacccattca
ttacttaacaaaaaggtggtattcaaagacttaggaatgcttgttgtagacgaggagcaa
cgttttggggtagcacaaaaagaaaagtggaaagagtgggctagcaatatcgatgtactc
accttgagtgctacaccgattccgcggactttacatatgtcccttgttggcgttcgagaa
atgtctgttatcaatactccgccagaggagcgattgcctgttcaaacctatgtggtggaa
tacgatatgaatctcatagcagatgctatcaaacgagaacttgcaagaggtggacaggtc
tatttcgtatataaccgtgtcgcatctattaatcatatgggagaactattagaatctgca
ttgcctggtttgcgttatgctgttgctcatggacagatgacaggccgtcaaattgaggag
attatgaccgatttctatgaaggtcattatgatgtgctcttgtctacaagtatcattgaa
accggcttagatattcctaatgccaatactatcatcatttatgatgcagaccgtttaggt
ttatctcagctataccaaatgcgagggcgtgtaggccgttctcgtagacgtgcttatgca
tactttatgtatcggccagataaaatactttcagaggcagctgaaaagcgtttgaaagcc
atagaggagttcactgagctcggcgcaggatttaagttagccatgcgagatttagagatt
cgcggtgccggtaatctattaggttcacagcaacatggtaatatcgcatctgtcggcttt
ggcatgtacgtgagtatgttagaagaggcgattgcaaaggctcaaaataaagaagttgag
cgagatgtatccattgatccagctatcgacttagaggtagatgcgtttattgatgatgcg
tatatcaaagatagtgctcgtaagatttctgtataccaacgattgttacatattaaatct
aaagagcaactcgacgatatgacggatgagctcattgatcgctttggtacaccaaccgat
ccagtagaccgtttgttgcgcattgctcaaattaaggagcaagcacgtctactgggcatt
aagagtgtcgtccgtagagataagcaactcactatccattggcatgacgattctaaaatg
gccgattgggatatgggggctgtaccagaagatttatggaaaaaaatgaagtttatggat
accaaaccagccacattatatgtgagccttaatggtatgaaaggttctattttgaccatt
acggaagcggtgataaaggctcttagccacaagtcaccgactaaggagggcctatga
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