Virgibacillus pantothenticus: KBP50_20095
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Entry
KBP50_20095 CDS
T07430
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vpt
Virgibacillus pantothenticus
Pathway
vpt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KBP50_20095 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpt03400
]
KBP50_20095 (ligD)
Enzymes [BR:
vpt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KBP50_20095 (ligD)
DNA repair and recombination proteins [BR:
vpt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KBP50_20095 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Telomere_reg-2
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QTY16090
LinkDB
All DBs
Position
4332917..4334725
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AA seq
602 aa
AA seq
DB search
MHVMKPIPSVDIPRGKEWLYEVKYDGYRCTLQWTKELIQLRSKNNTNLSKQFPEIIQACL
QLQEQVESHLPLTMDGELVILNQLYQANFEWVQKRARLQATSSIETASNQRSASFMVFDI
LQHQGESLLSIDLEKRKEYLQLLFTTYPFSQELIYVPSYKNPDQLWKEIFIHLGEGMIAK
RKNSLYKQGNNHQDWYKIKNWRSLSGFLTALDINNDYFQVSVYKHNQIVSIGKCKHGLDS
KEMDILRQLFQTKGELKSNTYILPPAICTAIHSLDLYKQELREPAFKQILPHARPEELTW
EKLQLDQAMFPTEVEITNLNKVFWSKPGYTKADLLLYIRQIAPYMLTFFKRRALTIIRAP
DGIDKEHFFQKHLPTYAPAFMPRHEHKGKHSIVCETLNDLIWLTNHGTVEFHTPFQTIAT
NTPEEIVFDLDPPSRDRFSLAIKAALNMKYLFDELQLISFVKTSGNKGLQVYIPIPSGSM
TYEDTALFTQTIAFTLEGTFPALFTTERFKHKRNDKLYIDYVQHGKGKTIIAPYSPRKTS
EGTVAMPLFWNEVTDDLTPQNFTIKNVVELVKERGCPWQSYEAVKKSQNLEEVLTFLQDH
HR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtcatgaagcctatacccagtgtagatatccccagaggtaaagaatggttatat
gaagtaaaatacgatggctatcgttgcacattacaatggactaaagaacttattcaacta
cggagtaaaaataatacaaatttaagtaaacagtttccagaaattatccaagcctgtttg
cagctccaagaacaagtcgaatcccatttgcccttaacaatggatggagaactcgtcata
ttaaaccaactctatcaagcaaattttgagtgggttcaaaaacgtgccagactacaggca
acatctagcatcgaaaccgcttctaatcaacgttctgccagttttatggtcttcgatata
ctgcagcaccaaggggaatctttgttatcgattgatttggaaaaacgcaaagaatacctc
caactactatttacaacttaccctttctcacaagaacttatatatgtaccaagttacaaa
aaccccgaccagctttggaaggaaatctttatacatcttggagaaggtatgatagcaaag
cggaaaaatagtctctataagcaagggaataatcaccaagactggtataaaataaaaaac
tggaggtcgttaagtggctttttaacagctttagatataaataacgattattttcaagta
agtgtatataaacataaccaaatcgtctccattggaaaatgcaagcatgggcttgattca
aaagaaatggatattttaagacaattatttcaaacaaaaggagaactaaaaagcaatact
tacattttgcctcctgctatttgtacagccatccatagccttgatttatataagcaagaa
ttacgtgaaccagctttcaaacaaatacttccacacgcgcgtccagaagaattgacttgg
gaaaagctacagcttgatcaggctatgtttccaacagaagttgaaataacaaatcttaac
aaagtcttctggtcgaaaccaggttatacgaaagcagacctcttgctttatattcggcaa
atagctccttacatgctgacgttttttaaaaggcgtgcacttacaattattcgcgcgcct
gatggaatagataaggaacattttttccaaaagcacttgcccacctacgcacctgctttt
atgccaagacatgaacacaagggaaaacatagtatcgtttgcgaaacattaaacgacctc
atctggttaaccaatcatggtaccgtagaatttcatacgccatttcaaaccattgcaaca
aatacacctgaagaaattgtctttgatttggacccaccaagcagagaccgtttttcttta
gcaatcaaagcagctttaaatatgaaatatctatttgatgaattacagttgatctctttt
gtcaaaacttcgggaaataaagggctgcaagtatatatcccgattccaagtggaagcatg
acctacgaagatactgccttattcacccaaaccatagcatttacattagaaggcaccttc
ccagcactattcaccactgaacgattcaagcataaacgtaatgacaagctttatattgat
tacgtccaacatggcaaaggaaaaacgattattgcaccttactcgcctagaaaaacttcg
gaaggaacagtcgccatgcccttattttggaatgaagtaacggatgatttaactccacaa
aactttacgataaaaaacgtcgttgagcttgtaaaagaacggggttgtccatggcaaagt
tatgaagccgtgaaaaaaagccaaaacctagaagaagttttgacttttttacaagatcat
catagatga
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