Vallitalea pronyensis: HZI73_15435
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Entry
HZI73_15435 CDS
T07178
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vpy
Vallitalea pronyensis
Pathway
vpy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HZI73_15435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpy03400
]
HZI73_15435
Enzymes [BR:
vpy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HZI73_15435
DNA repair and recombination proteins [BR:
vpy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HZI73_15435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QUI23594
UniProt:
A0A8J8SHM5
LinkDB
All DBs
Position
complement(3661204..3662097)
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AA seq
297 aa
AA seq
DB search
MDNFLIIDDHRVKISNADKLLWPDLGITKVDYIKYLIYLSPYLLSHAKDRFLTTIRYPDG
YDKKFFYQKKVPQYAPDFVETCEWKDGSMYINLNNQATLVWLGNLAALEFHTTFNRVQKP
NAPINLVFDLDPSRGQVFEQVIDVALKVHETLKKLKVTSYIKTSGATGLQIYIPIGEKYD
YDTARSISKFFAEYFAGKYPDMITIERLKEKRGQKLYFDYLQMWEGKSIITPYSPRATKH
ATIAMPVTWDEVEKGIRPEDFTIINALKRIDEKGDLFANLLSQNNVQNMDFVLEEIK
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atggataattttttaatcatcgatgaccatcgtgttaaaatctccaatgcggataagtta
ttatggccagacttaggtattacaaaagtcgattatataaaatacttgatttatctatca
ccttacttattaagtcatgcaaaagacaggtttttgacaaccattcgttatccagacggt
tatgataaaaagttcttctatcaaaagaaagtaccccaatatgcaccagattttgtggaa
acctgtgaatggaaagatggcagtatgtacattaacctgaataatcaggctacattagta
tggttaggtaatctagctgccttagaattccatacaacgtttaatcgggttcaaaagcca
aatgcccccattaacttggtttttgacttggacccatcaagaggacaagtttttgaacaa
gtcattgatgtggctttgaaagtgcatgaaaccttgaaaaaattaaaagtaaccagctat
attaaaacatctggggctactggtttacagatctatattcctataggggaaaaatacgat
tatgatacagctaggtccatcagtaaattttttgccgaatattttgcaggaaagtatccc
gatatgattaccatagaacgcttaaaagagaaaagaggtcaaaagctttatttcgattac
ttacagatgtgggaaggaaaaagtatcataacaccttattccccaagagccacaaaacat
gctaccattgccatgcctgttacatgggacgaggtagaaaagggcattcgacctgaagat
tttacgataattaatgcccttaaacgtatagatgaaaaaggagatttatttgctaatctt
ttatcccaaaacaatgtacagaatatggattttgtactagaagaaataaaataa
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