Vigna radiata (mung bean): 106762256
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Entry
106762256 CDS
T04126
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
106762256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vra03400
]
106762256
Enzymes [BR:
vra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106762256
DNA repair and recombination proteins [BR:
vra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
106762256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
106762256
NCBI-ProteinID:
XP_014501536
UniProt:
A0A1S3U6A3
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Position
5:complement(3297154..3311752)
Genome browser
AA seq
1173 aa
AA seq
DB search
MATEQTKFSVLCSLFTWTQRSKSAAKKRSKFRKFLDAFCIDRNFFPAIRLILPNLDRERG
SYGLKESVLATSLIDALGISRDSPDALRLINWRKGGAATGATAGNFALVAAEVLHRRQGT
ASGGLTIRELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAW
KKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAMSDIIIQNILVDRCIL
DGEMLVWDTSSKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQSLKER
HEILCKVVRPMKGRLEILVPNAGINSHLTSGEPCWSFIAHKVDEVEKFFKETIENRDEGI
VLKDRSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAER
QSPNAQPTRFISFCRVGTGLSDEELDVVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERP
DVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELV
HSSNGTTQRDTEYGSKQDSKPKRMKSSTRGDKKNMSIVPSHLIQTDISSIKGGTLIFSNM
MFYFANVPSSHSLESLHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHY
SWVLDCYEQKKLVCLQPKYFLFLSELTKKKFREEIDEFSDSFYLDLDLGDIKQLLSNISK
SEDVSTVDHYRKKYCPKDKWSFFCGCSIYFHTAIPSLKGDWHYILQLALRRFKLEVLMGG
GKVTSNLTSATHLVAFLVPGCLTDFEQILSSFTSVERKILRSKRLYIVNSQWLEDCSDSS
QRLPEDSYSLKPWGIEETTAEDCEQDLALEAHQCGDNTQDQNTSFSDKGNRQRSEQVACE
DSMAFLSGEKGIKRKRGRPVGIGIKNVKPIGKKTRKARPQNVKKPTKICEYESSDESDFR
DKQEIDTRAGSLNFYKKHSEPKENEEQENVQVSRTVESSEQNKVDNKLEDLKDNDHERML
IPEIEMTDRYNDQNNEVKEKLDFSADPLQAMLFDMIPSLGTQKVEQPMNLSVREEKLAKT
SNAETSNAETEPITTKKNKVSFMDAANELLKDW
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggagcaaaccaaattcagcgtgttgtgcagcctcttcacgtggacgcagcgg
agcaagtcggcggcgaagaagcgctccaagttccgtaagttcctcgacgccttctgcatt
gaccgcaacttcttccccgccattcgcctcattctccccaacctcgatcgtgagcgcggc
tcctatggcctcaaggagtccgttctcgccacctccctcatcgacgccctcggcatctcc
cgtgactcccccgatgccctccgactcatcaattggcgtaagggtggcgctgccaccggc
gctacagcaggaaattttgccctcgtcgccgccgaggtgctgcaccgcaggcaagggacc
gcttcgggagggttgacgataagggagttgaatgagttgcttgaccggttggcttccggt
gagaacagggctgagaaaattttggttctttctacccttatccaaaagacaaatgcacag
gaaatgaagtggattatcatgataatcctgaaagatctaaagctgggaattagtgaaaaa
agcatttttcatgagttccatcctgatgcagaagacttgtttaatgttacctgtgactta
aaactagtatgtgaaaagctaagggatcggaatcagcggcataagcggcaggatattgaa
gttgggaaagctgtgcgcccccaattagctaagagagttgctaatgcaactgaagcatgg
aagaagcttcatgggaaggaagtggttgttgagtgcaaatttgatggcgaccgaattcaa
attcataaaaacggaactgagatacattttttctcaaggaactttatagatcattctgaa
tatgcacatgcaatgtcagatatcataatacaaaatattcttgtagataggtgtatcctt
gatggtgaaatgttggtgtgggacacatcctcaaaacgctttgctgagtttggctcaaat
caggaaatagccaaggcagcaagagatggacttgatagtgacagacagttatgctatgtt
gcgtttgatatcctttattttggagatactagtgtgattcaccaatctttgaaggaaaga
catgagattttatgtaaagttgttaggccaatgaagggacggttggaaattttggtacct
aatgctggtatcaacagccatcttacttcaggtgaaccttgttggtcatttattgctcat
aaagttgatgaagttgagaagtttttcaaggaaaccattgaaaatagagatgagggaatt
gttttaaaagaccgcagctctaagtgggaacctagtgatcgtagtggaaagtggctaaaa
ttgaagcccgaatacattcaagctggctctgatttggatgtacttatcataggtggctac
tatggttctggacgacgtggaggacaggttgctcaattcttggttggccttgcagaacgt
caatctccaaatgcacaacctacgcgatttatatccttttgcagagttggcactggactc
tctgatgaggagcttgatgttgtagtaaccaaactaaaaccatacttcagaaagtatgaa
tatccaaagaagaggccaccaagtttttatcaagtaactaatcattcgaaagagagacct
gatgtgtgggttgatagccctgagaaatcaattattctgtctattaccagtgatatccga
actatagaatctgaggtatttgctgcaccttacagcctgagatttcctaggattgacagg
gtgagatatgacaaagcttggaacgaatgccttgatgttcaatcatttatagaactagtg
cattctagcaatggtaccacacagagggatacagaatatggcagcaaacaggacagtaaa
ccaaaaagaatgaaatcctccactaggggagacaagaaaaacatgtccattgttccttct
catttaattcaaactgatatttccagcattaaggggggcaccttaatattttcaaatatg
atgttctactttgctaatgtgccttcatcgcattctcttgagtccttgcacaaaataatt
gctgagaatgggggaactttttcaatgaatttgaacaactcagtcacacattgtgttgcc
gcagacagcaagggctttaaatttgaagcagcaaagcgtcatggtgatatcattcattat
tcttgggtactagactgttatgaacaaaaaaagcttgtctgcttacagcctaagtacttc
cttttcctatctgaactgacaaagaagaagttccgagaagaaattgatgagttctcagac
tctttctacttggacctagatcttggagacatcaagcagctcctaagcaatattagtaag
tctgaagatgtcagcactgtcgatcattacaggaaaaaatactgtccgaaggataagtgg
tctttcttttgtggatgttcaatttatttccacactgcaataccttcattgaaaggagat
tggcattatatattacaacttgctttgaggagattcaagcttgaagttctcatgggtggt
ggaaaagttacctctaatcttacttctgcaacccatttagtggcctttcttgtgccagga
tgtctgactgactttgaacaaatactgagtagtttcacttcagtagaaaggaaaattctc
cgaagcaagaggttgtatatagttaattcccagtggttggaagattgttcagacagtagc
caaagattaccagaagactcttacagtttgaagccctggggaatagaagagacaactgct
gaagattgtgaacaggacttggcgttagaggctcatcagtgtggagataacacacaagac
caaaatacatctttctctgacaagggaaatcggcaaagaagtgaacaagttgcatgcgaa
gacagtatggccttcttatccggagagaagggtatcaaaaggaaaagaggaagacctgtg
ggcattggtataaaaaatgtaaaaccaataggcaaaaaaactcgaaaagcacgaccacaa
aatgtgaaaaagcctactaaaatatgtgaatatgaatcatcggatgaaagtgattttcgt
gacaagcaggagattgacaccagagcaggaagtcttaacttttataagaaacattcagaa
cccaaggagaatgaggaacaagaaaatgtccaagtttctaggacagtggaaagttctgaa
caaaataaggtagataacaagctggaggacttgaaggacaatgatcatgaaagaatgttg
attcctgaaatagaaatgactgataggtacaatgaccaaaacaatgaggtgaaagagaaa
ttagacttttctgctgacccccttcaggcgatgttatttgacatgattcctagtcttggc
acccaaaaagttgagcaacctatgaatcttagtgttagagaagagaaactagcaaaaacc
tccaatgcagaaacctccaatgcagaaacagagcctataactacaaagaaaaataaggtt
agcttcatggatgctgccaacgagctgctgaaggactggtag
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