Vigna radiata (mung bean): 106768574
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Entry
106768574 CDS
T04126
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106768574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vra03019
]
106768574
03041 Spliceosome [BR:
vra03041
]
106768574
03009 Ribosome biogenesis [BR:
vra03009
]
106768574
03016 Transfer RNA biogenesis [BR:
vra03016
]
106768574
Enzymes [BR:
vra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106768574
Messenger RNA biogenesis [BR:
vra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106768574
Spliceosome [BR:
vra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106768574
Complex C
U4/U6.U5 tri-SnRNP related factors
106768574
Ribosome biogenesis [BR:
vra03009
]
Eukaryotic type
Pre-60S particles
Helicases
106768574
Transfer RNA biogenesis [BR:
vra03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106768574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
106768574
NCBI-ProteinID:
XP_014509289
UniProt:
A0A1S3UTR3
LinkDB
All DBs
Position
7:52887057..52897748
Genome browser
AA seq
983 aa
AA seq
DB search
MEMENEQKESPSLGKRREPELPVTVPDTASKPKRARSAERTCVHEVAVPSGYVSSKDSEL
HGTLSNPLHKGPMAKSYPFTLDPFQQVSIACLERNESVLVSAHTSAGKTAVAEYAIAMSF
RDRQRVIYTSPLKALSNQKYRELSQEFTDVGLMTGDVTLSPNATCLVMTTEILRGMLYRG
SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNI
HKQPCHVVYTDFRPTPLQHYAFPIGGSGLYLVVDENEQFREDNFLKLHDTFGKQNSADGR
RGGKSGGRGGRGGNTSGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNT
PEEKETVEQVFRNAMLCLNEEDRCLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQE
GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERG
ICIIMIDEQMEMNNLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQ
FQYEKALPDIKKRVSKLEQEVNLLDASGEAEVSEYHKLKLEIAQLEKKMMAKIIRPEIIL
YFLVPGRLVKIREGGTDWGWGVVVNVVKKPSGGGYIVDTLLHCSPCSTENNSRPKPCPPR
PGEKGEMHVVPVQLPLISTLGKLRVSIPSDLRPLEARQSVLLAVQELVNRFPGGLPKLNP
VKDMDVRDSEIVELVNQIEEIEKKMFAHPMHKRQDVDQIKCFERKAEVNHEIQQLRTKMR
DSQLQKFREELKNRSRVLKKLGHIDGDGVVQLKGRAACLVDTGDELLVTELMFNGTFNDL
DHHQVAALASCFIPGDKSNEQIQLRTELARPLQQLQDSARRIAEIQHECKLDINVDEYVE
STVRPYLMDVIYSWSKGVNFADIIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEADL
EKKFAAASESLRRGIMFANSLYL
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagaacgagcagaaggaatcaccgtcgttgggaaagcgaagagaacccgaa
ctaccagttacagtcccagacacggcatcgaagccgaaacgagctcgcagcgctgagcgc
acttgcgtgcacgaggtcgccgttccgagcggttatgtctcaagcaaggactccgagctg
cacggaactctctcgaatcctctccacaagggtcccatggcgaagtcgtatcccttcaca
ctcgaccccttccaacaggtctccatcgcgtgtttggagcgcaacgagtccgttctcgtc
tccgcccacacctctgctggcaaaaccgccgtcgccgaatacgccattgccatgtccttc
cgcgaccggcagcgtgtcatctacacgtctccgctcaaggccctcagcaaccagaagtat
cgtgagctcagccaggagttcaccgacgtcggcctcatgactggcgacgtcacgctctca
ccgaacgccacttgtctcgtcatgaccaccgagattctccgtggtatgctctaccgaggt
tccgaagtcctgaaagaagtggcgtgggttatattcgatgaaattcactacatgaaggat
cgagaacgaggcgttgtatgggaagagagtataatttttctgcctccggcgattaagatg
gtgtttctttccgcaaccatgtctaatgcaaccgaatttgcggagtggatttgtaatatc
cacaagcagccttgtcacgttgtgtacactgattttaggcctacgccgttgcaacactat
gcgtttcccatcggagggagtgggctgtacttggttgtagatgaaaatgagcagttcagg
gaggacaattttctgaagctgcatgatactttcgggaagcagaattcagctgatgggagg
agaggtgggaaaagcggtggaagaggtgggagaggtggcaatacttctggtggttctgac
atttacaaaattgttaagatgataatggaacggaaattccaacctgttatcatctttagc
ttcagtagaagagagtgtgaacagcatgcaatgtctatgtccaagcttgacttcaacacc
ccagaagaaaaggaaacagtggagcaagtttttcgaaatgcaatgctatgtttgaatgag
gaagacaggtgcttacctgctattgagctgatgttgcctcttcttcagcgagggattgct
gtccatcattctggacttcttcctgttatcaaagaattggttgagcttcttttccaggaa
ggtcttgtaaaagccctatttgctactgaaacttttgccatgggtttgaatatgccagca
aaaacagtagtattcactgctgttaagaagtgggacggtgatagtcaccgatatattgga
tctggtgaatatatacagatgagtggaagggctgggcgtcgaggcaaagatgagcgggga
atctgtatcataatgattgatgaacagatggaaatgaataacctcaaagacatggttttg
ggtaaacctgctcctttagttagtactttcaggcttagctattactcaattttaaatttg
atgagccgtgctgagggtcagttcactgctgaacacgtaatacgaaattcatttcaccaa
tttcagtatgaaaaggccttaccagatataaagaaaagggtgtcaaagctggagcaggag
gtaaacttgcttgatgcttcaggggaggctgaagtgtctgagtatcataagctaaaattg
gaaatagcacagttggagaagaagatgatggcaaaaataattaggccagaaataatcctt
tattttctggtccctggtcgattggtcaaaatcagagaaggtggaactgattggggttgg
ggtgttgtagtcaatgttgttaaaaaaccttccggtggtggttatatagtcgatacttta
cttcattgttcaccttgttcaactgaaaacaattcacggccaaaaccatgtccacctcgc
cctggagagaaaggtgaaatgcatgtggtccctgttcaattaccattaatatccactctt
ggtaaactgagggtatctataccttctgatcttcgacccttggaagcaaggcagagtgta
ctgcttgctgtacaggagcttgtcaatcgttttccaggaggtcttccaaagcttaaccct
gtaaaggacatggacgtacgtgactcggagatagttgaactagttaatcaaatagaggaa
attgagaagaaaatgtttgctcatcctatgcataagcgccaagatgtggatcaaattaaa
tgctttgagaggaaagcagaagtgaatcatgaaattcagcaactgaggacaaaaatgcgg
gattctcagctacaaaaatttcgtgaagaattaaagaatcgctcccgagtcttaaagaag
cttggtcatattgatggtgatggtgtagttcagttgaagggacgggcagcctgcttggtt
gacacgggggatgaactccttgttactgaattgatgtttaatggtacttttaatgacctt
gaccaccatcaagttgctgctcttgcaagttgtttcatcccgggagataaatcaaatgag
cagatacaactaagaacagagcttgcaaggcccttgcaacaacttcaagatagtgcaaga
aggatagcagaaattcaacatgaatgcaaattggatataaatgtggatgagtatgttgaa
tcaacagtaaggccatacttgatggatgtaatatactcgtggtcaaagggagtaaatttt
gccgatattatacaaatgactgacatctttgagggaagtatcattcggagtgctagaaga
cttgatgagtttttgaaccagttgcgtgctgctgcaaatgcagttggagaggctgacttg
gagaagaaatttgctgctgcaagtgaaagccttcgaagaggcattatgtttgcaaattct
ctgtatttatga
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