Vigna radiata (mung bean): 106775913
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Entry
106775913 CDS
T04126
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106775913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vra03021
]
106775913
03019 Messenger RNA biogenesis [BR:
vra03019
]
106775913
Transcription machinery [BR:
vra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106775913
Messenger RNA biogenesis [BR:
vra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
106775913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
zf-CCCH_3
Torus
Motif
Other DBs
NCBI-GeneID:
106775913
NCBI-ProteinID:
XP_014518648
UniProt:
A0A1S3VJV0
LinkDB
All DBs
Position
10:complement(13918228..13929509)
Genome browser
AA seq
696 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDTVPSAAAAPSGPLVQHDSSAAASAVSNGGPPAPVPSTADPAAV
NVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHT
NEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQR
GSSYAQQAEKSQLPQGTNSTNQVVTGKPLPAESGNAQPQQQVQQSQQQVSQSQMQNVANG
QPNQASRSATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSXENVI
LIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRH
LRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSVAAESKREEEKAKGVN
PDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGRGA
RPMPGMQGFNPVMMGDGLSYGPVAPDGFGMPDLFGVGPRAFAPYGPRFSGDFGGPPAAMM
FRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVAGANPARGGRPVNMPPMFPPPPPLPQN
TNRLAKRDQRATDRNDRYGSGSEQGKSQDMLSQSGAPDDDTQYQQGYKANQDEHPAVNNF
RNDDSESEDEAPRRSRHGEGKKKRRGPEDVNTNYNH
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggaggattccgagggagtcctcagcttcgatttcgagggcggcctcgacaccgttcct
tccgccgccgccgccccttccggtccgctcgtccaacacgactcttccgctgccgcttcc
gctgtgtccaacggaggccctcccgccccggtcccctccacagccgaccccgcagccgtc
aacgttcccggccgacggagctttcggcagacggtatgccggcactggctgcgtagcctg
tgcatgaagggcgacgcgtgtgggtttctgcaccagtacgacaaggcgcgaatgcctgtt
tgccgattcttcaggctctatggagagtgtcgggaacaggattgcgtgtataaacacacg
aacgaagacatcaaggagtgtaacatgtacaagttgggattttgtcctaatgggcctgat
tgccgatataggcatgcaaaatctcctggacctccacctcctgttgaagaggtccttcag
aagatccaacatttatattcctacaattataattcatctaacaaatttttccagcaaagg
ggttctagctatgcccaacaagctgaaaaatcccaacttcctcaaggaacaaactctaca
aatcaagttgtgactggaaaaccattgccagcagagtcaggaaatgcccagccacagcaa
caagttcaacagtctcagcagcaggtcagccagagtcaaatgcaaaatgttgctaatggc
cagcctaatcaagccagtagatctgctacccctttacctcaaggaatatctaggtatttt
attgttaaaagttgcaatcgtgaaaatttggagttatctgtacaacaaggagtatgggca
actcaaaggagcaatgaatccaaactaaatgaagcatttgactctntggaaaatgtgata
ttgattttctcagtcaaccgtactagacatttccagggttgtgcaaagatgacatccaga
attggtggttctgttgctgggggtaactggaaatatgctcatggaactgcacattatggg
cgaaacttctcagttaaatggttgaagttatgtgaactgtctttccacaaaacccgccat
ttaaggaatccatacaatgagaacttaccagtgaagataagtagagattgtcaggagctg
gagccctctattggagagcaactggcatcattgctttatcttgagccagatggtgaactt
atggccgtttcagtcgcagcggagtctaaacgggaagaagaaaaagcaaagggagtgaat
ccagataatggaggagaaaatccagatattgttccatttgaagacaatgaagaagaggaa
gaggaagaaagtgatgaagaggaggagagctttggtcatggtgtagggccagctggtcaa
ggcaggggtaggggcagaggtatgatgtggccacctcacatgccccttgggcgtggagcc
cgacccatgcctggaatgcagggctttaaccctgtaatgatgggtgatgggttatcctat
gggccagttgcacctgatggttttggtatgccagatctttttggtgtgggaccccgtgct
tttgcaccatacggtcccaggttctctggtgattttggaggtcctccagcagccatgatg
tttcgagggcgaccttctcaaccagggatgtttccaggtggtggttttgggatgatgatg
aatcctggacgtggtcccttcatgggggggatgggggttgcaggggcaaatccagcaaga
ggtggtaggccggttaatatgcctccaatgtttccaccacctccacccttacctcagaac
acaaaccgtctggccaaaagagatcaaagagctactgatagaaatgataggtatggttcg
ggatcagagcagggtaagagtcaagacatgctcagtcaaagtggtgcacctgatgatgac
acgcagtatcagcaaggatacaaagccaaccaggatgaacatcctgctgtcaacaacttc
cggaatgatgacagtgaaagtgaggatgaagcacctaggaggtcaagacatggagagggg
aaaaagaaaaggcggggcccagaagatgtcaatacaaactataatcattag
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