Veillonella rogosae: OKW85_02470
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Entry
OKW85_02470 CDS
T08601
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vrg
Veillonella rogosae
Pathway
vrg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vrg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OKW85_02470 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vrg03400
]
OKW85_02470 (mfd)
Enzymes [BR:
vrg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OKW85_02470 (mfd)
DNA repair and recombination proteins [BR:
vrg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OKW85_02470 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
TRCF
DEAD
CarD_TRCF_RID
ResIII
MFD_D3
SecA_DEAD
RecG_dom3_C
DAP3
Motif
Other DBs
NCBI-ProteinID:
UZG51482
UniProt:
A0AA47AIQ3
LinkDB
All DBs
Position
571776..575072
Genome browser
AA seq
1098 aa
AA seq
DB search
MDNTLTKLLSQNPSFVDGLNAFQRKGKSVIYGLSGSQKSFLLNQAFTTGLTKPVVIVVHD
KDHKEMWERDLAFFMPNVPVLSFPITDHVDFTTVARSLEDQGAQMRALALLAWQEPAVVI
ANAEEVTQYVVSPQYLKGQSLHFALNDTIERDTALEQLVTIGYERVDQVEQRGHFAVRGD
ILDIYPVNSDNPIRIEFFGDEIDTLRFFSVENQRSIEQIDSYTVTPFFLGKSDADSTLLS
YVKDGLLIYDEPGRIQEALKKFLKEDPTHRKNHCDWSELQRTVEAMTQVAFTFMQQRSIG
LTGFNPIGIQGKTMTSFERQIPLLTDEIKQWHRLNHQVVLVLNNQQRREGIERALEGENI
AFIHSEEWIAKPNTVVILQGLLTDGFELPNSHLVVVVEGNIYGQQKRKLRNKPKKGQEIN
YFTDLTPGDYVVHSMHGIGKYIGLKTIETEGIHRDYIEIAYAGTDKLFLPANNLDQLQKY
IGNEGDVPRIHKMGGRDWAKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPWQQE
FEDAFPYEETEDQLQATAEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQV
AVLVPTTVLAQQHFQTFLNRFAPFGVKVDVLNRFRSTAEKKQVLKGVEDGSIDVLIGTHS
LLNKKVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVRE
MSVINTPPEERLPVQTYVVEYDMNLVADAIKRELARGGQVYFVYNRVASINHMGELLEAA
LPGLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLG
LSQLYQMRGRVGRSRRRAYAYFMYRPDKMLSEAAEKRLKAIEEFTELGAGFKLAMRDLEI
RGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVEREVSIDPAIDLEVDAFIDDA
YIKDSARKISVYQRLLHIKSKEQLDDMTDELIDRFGTPTDPVDRLLRIAQIKEQARLLGI
KSIVRRDKQLTIHWHDDSKMADWDMGAVREDLWKKMKFADTKPATLYVSLNGMKGSILTI
TEAVMKALSHKSSTKEGL
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggataatacattaactaagctgctttcacagaacccatcctttgtggatgggctaaac
gcatttcagcggaaaggaaagtcagttatatatggtcttagtggttctcaaaagagtttc
ctcttaaaccaagcatttactacaggacttacaaagcctgtagttatcgtagtccatgat
aaggaccataaagagatgtgggaacgggacttagcttttttcatgcctaatgttccagtc
ctctcatttcctatcacagatcatgtagactttacgactgtggctcgtagccttgaagac
caaggggcccaaatgcgtgcattagcccttctagcatggcaggagccagcagtggttatt
gctaatgcagaggaggttacacaatacgttgtatctccacaatatttaaaaggacaatcg
ctacattttgctttaaatgatacgattgagcgtgatacagcgcttgaacaacttgtcaca
attggatatgagcgagtagaccaggtggaacaacgtggtcattttgccgtgcgtggcgat
attttagatatttatcctgttaatagcgacaatcctatacgtatagaattctttggtgat
gaaatcgataccttgcggtttttctctgtagagaatcaacggtctattgaacaaattgat
tcttatacggtgacgcctttcttccttggtaaaagcgatgcagatagtaccttattatcg
tatgtaaaggatggtcttctcatttacgatgagccaggacgtattcaagaagcgttaaag
aaattcctcaaggaagatcctacacatcgtaaaaatcattgtgactggagtgaattgcag
cgcactgtagaagcgatgactcaagtggcttttacatttatgcaacaacgctctattggt
cttactggatttaaccctattggtattcaagggaagacgatgacgagctttgagcgtcaa
attcctttattaacagatgaaattaagcaatggcatcgcctaaatcatcaagttgtattg
gtattaaataaccaacaacgacgagaaggcattgaacgagctcttgaaggagaaaatatc
gcctttattcatagtgaagaatggattgctaagcctaatacggttgttatattacaaggg
ttattgaccgatggctttgaattgccaaatagccatttagtagttgtcgtagaaggcaat
atttatggacaacaaaagcgtaagcttcgcaacaagcctaaaaagggccaagaaatcaat
tattttacggatttaacccctggcgactatgttgtacatagtatgcacggtatcggtaag
tatattggccttaaaacgatagaaacggaaggcattcatcgcgactatattgaaatcgct
tatgcgggaacggataaactgtttttgcctgcaaacaatttagatcagttacaaaaatac
atcggcaatgaaggtgatgtgcctcgtattcataagatgggtggccgtgactgggctaag
gttgttacaaaggcaaaaaaatccatcgatgatttggcagataagcttgttgagatctat
gcacaacgagaaattacagaaggctttgcatttttgccagatcaaccatggcagcaagag
tttgaagatgcattcccctatgaagagacggaagatcagttacaagctacggcggaaatt
aaagaatctatggagcgacctgttcctatggatcgattgctagctggagacgtagggttt
ggtaaaactgaagtcgctatgagagctatctttaaagctgttatgagtggcaagcaagtt
gcggtgctcgtaccaactactgttttagcgcaacaacatttccaaaccttcttgaaccgc
tttgctccatttggcgtaaaggtagatgtacttaatcgattccgcagtacagctgagaag
aaacaagttttaaaaggtgtagaggatggctcgattgatgttctcatcggtacccattcg
ctacttaacaaaaaggttgtctttaaagacttgggcatgctcgttgtagacgaggagcaa
cgttttggggtagcgcaaaaggaaaaatggaaagagtgggctagtaatattgacgtgctt
actttgagtgctacaccaattccacggaccttacatatgtctctcgtaggtgttcgtgaa
atgtccgtcatcaatacgccacctgaagaacgattacctgttcagacctatgtggtggaa
tatgacatgaacctcgttgcagatgcgattaagagagaattggcacggggtggacaagtt
tactttgtatataaccgcgtggcatctattaatcacatgggtgaattattagaagcggcg
ttgccagggttgcgttatgctattgctcacggtcaaatgacgggccgtcaaattgaagaa
attatgaccgatttctatgaaggtcattacgatgtattattgtctacaagtatcatcgaa
accggtctagatattccgaacgccaatactatcattatttatgatgcggatcgtttaggt
ttatctcagctatatcaaatgcgtggtcgcgtaggacgttctcgtagacgggcctatgca
tactttatgtatcgacctgacaaaatgctttcagaagccgcagaaaagcggttaaaagct
attgaagagttcacggagctaggtgcaggtttcaaacttgctatgcgagacttagaaatt
cgtggtgcaggtaatctattaggttcacagcaacatggcaatatcgcatctgtcggcttt
ggcatgtacgtaagtatgcttgaagaagcgattgcaaaggctcaaaataaagaggtagag
cgcgaggtatctattgatccagctatcgacttagaggttgatgcctttatcgatgatgcg
tacattaaagatagtgctcgtaagatttctgtatatcaacggttgttacatattaaatct
aaagaacaactagatgacatgacagatgaactgatagatcgttttggtacgcctacagat
ccggtagatagattattgcgtattgctcaaattaaagaacaagcacgtctgcttggtatt
aaaagtatcgtccgtagagataaacagcttacgatccattggcatgatgactccaaaatg
gccgactgggatatgggagctgtacgggaagatttatggaaaaaaatgaagtttgcagat
accaagcctgccacattatatgtgagccttaatggtatgaaaggttctattttgaccatt
acggaagcggtgatgaaggcactgagccacaagtcatcgactaaggagggcctatga
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