Vitis riparia (riverbank grape): 117916507
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Entry
117916507 CDS
T07274
Name
(RefSeq) histone deacetylase 9-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03082
ATP-dependent chromatin remodeling
vri03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117916507
03083 Polycomb repressive complex
117916507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vri03036
]
117916507
Enzymes [BR:
vri01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
117916507
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
117916507
HDAC complexes
Sin3A-HDAC complex
117916507
BRAF-HDAC complex
117916507
REST complex
117916507
SHIP complex
117916507
MiDAC complex
117916507
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
117916507
Heterochromatin formation proteins
Other heterochromatin formation proteins
117916507
Chromatin remodeling factors
NuRD complex
117916507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
117916507
NCBI-ProteinID:
XP_034688471
LinkDB
All DBs
Position
6:complement(2429948..2444825)
Genome browser
AA seq
430 aa
AA seq
DB search
MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFLNELAKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT
IIAKVVEIYQPGVIVLQCGADSLAGDRLGCFNLSIDGHAECVRIVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPENEYIKYFGPEHSLKIPNGHIENLNSKSYLGTIK
QQVLENLRCIQHAPSVQMQEVPPDFYIPDFDEDEQNPDERVDQHTKDKQIQRNDEYYEGD
NDNDHNMDDV
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcgctctaaggacaggatctcctacttctacgacggtgatgtgggaagtgtgtacttt
gggcccaaccatccaatgaagccgcatcggctttgtatgactcaccatctcgtactctct
tacgaacttcacaagaagatggaaatctataggcctcacaaggcgtatccagttgagctt
gcccagtttcattctgcagactatgtggagtttctgcatcggataacccctgacacacaa
catttattcttgaatgaattagcaaaatataatcttggagaagattgccctgtcttcgaa
aatttatttgagttttgtcaaatttatgctggtggaacaatagatgctgcacgcagatta
aacaatcagctttgtgacattgctataaattgggctggtggattgcaccatgcaaagaag
tgtgaggcatctggattttgttacatcaatgacttggttttggggattttggagcttcta
aaacatcatgcacgtgtcctttatatcgatatagatgtgcatcatggtgatggtgtagaa
gaagccttttatttcacagacagggtgatgactgttagttttcacaagtatggggatatg
ttctttcctggaacaggtgatgttaaggaaataggagaaagagagggaaaattttatgcc
ataaatgtcccactcaaggatggaatagatgacactagctttactcgactgttcaaaaca
attattgccaaggttgttgaaatatatcagccaggtgtgatagttcttcaatgtggggca
gattctcttgctggggaccgcttgggctgtttcaacctctccattgatgggcatgctgaa
tgtgtcagaattgtgaagaaattcaatttgcccttactggttactggaggtgggggatat
acaaaagagaatgttgctcgatgttggactgttgaaacaggggtgcttttagatactgaa
cttcccaatgagatcccagaaaatgaatatatcaaatattttgggccggagcattcattg
aagattccaaatgggcacatagagaacttaaatagcaaatcatatcttggaacaattaag
cagcaagtcttggaaaatctccgttgcatccagcatgcaccaagtgtacagatgcaagag
gttccaccagacttctatattcctgattttgatgaagacgagcagaatcctgatgaacga
gtagatcagcacaccaaggacaagcaaatccagagaaatgatgaatattatgaaggtgat
aacgacaatgatcacaatatggatgatgtataa
DBGET
integrated database retrieval system