KEGG   Vitis riparia (riverbank grape): 117916507
Entry
117916507         CDS       T07274                                 
Name
(RefSeq) histone deacetylase 9-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03082  ATP-dependent chromatin remodeling
vri03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    117916507
   03083 Polycomb repressive complex
    117916507
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:vri03036]
    117916507
Enzymes [BR:vri01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     117916507
Chromosome and associated proteins [BR:vri03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     117916507
   HDAC complexes
    Sin3A-HDAC complex
     117916507
    BRAF-HDAC complex
     117916507
    REST complex
     117916507
    SHIP complex
     117916507
    MiDAC complex
     117916507
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     117916507
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    117916507
  Chromatin remodeling factors
   NuRD complex
    117916507
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 117916507
NCBI-ProteinID: XP_034688471
LinkDB
Position
6:complement(2429948..2444825)
AA seq 430 aa
MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFLNELAKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT
IIAKVVEIYQPGVIVLQCGADSLAGDRLGCFNLSIDGHAECVRIVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPENEYIKYFGPEHSLKIPNGHIENLNSKSYLGTIK
QQVLENLRCIQHAPSVQMQEVPPDFYIPDFDEDEQNPDERVDQHTKDKQIQRNDEYYEGD
NDNDHNMDDV
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcgctctaaggacaggatctcctacttctacgacggtgatgtgggaagtgtgtacttt
gggcccaaccatccaatgaagccgcatcggctttgtatgactcaccatctcgtactctct
tacgaacttcacaagaagatggaaatctataggcctcacaaggcgtatccagttgagctt
gcccagtttcattctgcagactatgtggagtttctgcatcggataacccctgacacacaa
catttattcttgaatgaattagcaaaatataatcttggagaagattgccctgtcttcgaa
aatttatttgagttttgtcaaatttatgctggtggaacaatagatgctgcacgcagatta
aacaatcagctttgtgacattgctataaattgggctggtggattgcaccatgcaaagaag
tgtgaggcatctggattttgttacatcaatgacttggttttggggattttggagcttcta
aaacatcatgcacgtgtcctttatatcgatatagatgtgcatcatggtgatggtgtagaa
gaagccttttatttcacagacagggtgatgactgttagttttcacaagtatggggatatg
ttctttcctggaacaggtgatgttaaggaaataggagaaagagagggaaaattttatgcc
ataaatgtcccactcaaggatggaatagatgacactagctttactcgactgttcaaaaca
attattgccaaggttgttgaaatatatcagccaggtgtgatagttcttcaatgtggggca
gattctcttgctggggaccgcttgggctgtttcaacctctccattgatgggcatgctgaa
tgtgtcagaattgtgaagaaattcaatttgcccttactggttactggaggtgggggatat
acaaaagagaatgttgctcgatgttggactgttgaaacaggggtgcttttagatactgaa
cttcccaatgagatcccagaaaatgaatatatcaaatattttgggccggagcattcattg
aagattccaaatgggcacatagagaacttaaatagcaaatcatatcttggaacaattaag
cagcaagtcttggaaaatctccgttgcatccagcatgcaccaagtgtacagatgcaagag
gttccaccagacttctatattcctgattttgatgaagacgagcagaatcctgatgaacga
gtagatcagcacaccaaggacaagcaaatccagagaaatgatgaatattatgaaggtgat
aacgacaatgatcacaatatggatgatgtataa

DBGET integrated database retrieval system