Vitis riparia (riverbank grape): 117919725
Help
Entry
117919725 CDS
T07274
Name
(RefSeq) LOW QUALITY PROTEIN: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117919725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vri03041
]
117919725
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117919725
Spliceosome [BR:
vri03041
]
Complex C
Other components
Step II factors
117919725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
AAA_16
TsaE
ABC_tran
Sigma54_activ_2
T2SSE
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
117919725
NCBI-ProteinID:
XP_034692856
LinkDB
All DBs
Position
8:complement(749144..761473)
Genome browser
AA seq
1226 aa
AA seq
DB search
MSVDAQNDGLKKLEYLSLVSKVCTELETHLGVGDKVLAEFITDMGRKCETVDEFDSKLKE
NGAEMPDYFVRTLLTIIHAILPPKPKSDDKGMKKDGGDGKKSKFPALGIGDSKERVKELE
REIEMESRDRRRQEEEAKHRDERNRDRXTETDRRERHRERNDRSERHRERDDRNERHRER
DDRSERHRERDDRSERHRERDDGSERGTGRADDDYDDNNDYRGRGRHRDRYEKHRRDGYE
ENGDNREGGEDGGDRRSDRDRRNGRYHSDEPELYNVYKGRVSRVMDTGCFVQLNDLKGKE
GLVHVSQIATRRVGNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQNTGRDLIPLKKSS
EDDALRTNPSGSNQGPVSRTGLSGIRIVEENDAAPSRRPLKRMSSPEKWEAKQLIASGVL
DIREFPMYDDEGDGMLYQEEGAEEELEIEINEDEPAFLQGQSRYSMDMSPVKIFKNPEGS
LSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLS
AYDMPEWKKDAFGKALTFGQRSKLSIQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGS
GKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRIGEEVGYAIRFEDCT
GPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIYTDVLFGLLKQLVKRRPDLR
LIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEP
EGDILLFLTGQEEIDHACQSLHERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGK
RKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAG
RTGPGKCYRLYTESAYRNEISPTSIPEIQRINLGVTTLMMKAMGINDLLSFDFMDPPSPQ
ALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTIIAMI
QTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSL
RRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQP
VYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPRFFNVADPTKMSKR
KRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtggacgcccaaaacgatggtctcaagaagctcgagtacctttctctggtttcg
aaggtttgcacggagctggaaactcatctcggggtcggggacaaggttttggcggaattc
atcaccgacatgggtcgaaagtgcgaaactgttgatgaattcgattccaaattgaaggag
aatggcgcggaaatgccggattactttgtgaggactctgttaactataattcatgccatt
cttccgccgaagcccaagtcggatgataagggaatgaagaaggatggcggtgatggtaag
aaatcgaagtttccggcgttagggatcggggacagtaaggagagagtgaaggaacttgag
cgagagattgaaatggaaagccgggatcggcgccgacaggaggaagaagcgaagcacagg
gatgaaagaaatagagataganngacggagacagatagaagagagaggcatagggagaga
aatgataggagtgagaggcatagggaaagagatgataggaatgagaggcatagggagaga
gatgatagaagtgagaggcatagggagagagatgataggagtgagaggcatagggagaga
gatgatgggagtgagaggggtacagggagggcagatgatgattatgatgataacaatgat
tacaggggtcgtggaaggcaccgggatcgatatgagaagcataggagagatgggtatgaa
gagaatggtgataatagggagggtggtgaagatgggggggataggaggagcgatagggat
aggagaaacggaaggtatcactcagatgagccggaattgtataacgtatataaggggagg
gtttcaagagtgatggacactggttgctttgtgcagctgaatgatttgaaggggaaagag
ggtttggtgcatgtttctcagattgcgactcgaagggtgggtaatgcaaaagatgtggtg
aagagggatcaggaggtttatgttaaggtgatctctgtttcgggtcagaagctgagtctt
tctatgagggatgttgatcagaatactgggagagatttgattcctttgaaaaagagctcg
gaggatgatgctttgagaacgaacccttcaggttcaaaccaggggcctgtgagtaggact
ggtctttcaggaataaggattgtagaagagaatgatgctgccccatcaaggcggccattg
aaacggatgagttctccagagaaatgggaagcaaaacagttgattgcttcaggggttctg
gatattagggagtttcctatgtatgatgacgaaggagatggcatgctttatcaagaagag
ggtgctgaggaggagcttgagattgagataaatgaagatgaaccggcctttttgcaaggg
cagagtcgatactctatggacatgtctcctgtgaagatcttcaagaatccagaggggtcc
ttgagtcgagctgctgcccttcagtcagctctcataaaggaacgaagagaagtacgggaa
cagcagcagagaacaatgcttgattctattcctaaagatctcaatcgtccctgggaagac
ccaatgcctgagacaggtgagaggcatcttgctcaggagctgaggggtgttggtctatca
gcctatgatatgcctgaatggaagaaggatgcttttggaaaagccctgacttttggccaa
agatcaaaactctccatccaggagcagagacaaagcttgcctatctacaagttgaagaag
gaacttgttcaggctgtgcatgataatcaggttcttgtagtcattggtgagactggttct
ggcaagacaacacaagtaacacagtatctagctgaagcaggttacactaccaggggaaag
attggatgtacccaaccccgtagagtggctgcaatgtctgtggcaaagagggttgctgaa
gagtttggttgtcgtataggagaggaagttgggtatgctattcggtttgaggattgtact
ggaccagatactgtcatcaagtacatgactgatggcatgcttctcagggagattctgatt
gatgacaatctttctcaatattctgtaatcatgcttgatgaagctcacgagaggacaatc
tacactgatgtcctttttggattgctgaagcaacttgtgaaacggagacctgatcttcgc
ttgattgtcacatctgccacattggatgcagagaaattttcagggtatttcttcaactgc
aacatctttaccatccctggaagaacttttcctgtggagatactctacaccaaacaacct
gaaagcgattacctagatgcatctttgattactgtcctccaaattcatttgacagaacca
gaaggagacatcctcctcttcttgactggtcaggaggagattgatcatgcatgccagtct
cttcacgagaggatgaaagggctaggtaaaaatgttcctgaactcattattttaccagtc
tatagtgcccttcctagtgaaatgcagtcgaggatttttgaccctgctcctccagggaag
aggaaagtggttgtggctaccaacattgctgaggcttctttaaccattgatggtatcttt
tatgtcattgatcctggttttgcgaagcaaaatgtctacaaccccaaacaagggcttgat
tcattggtcataacacctatttcacaagcatcagccaaacaacgagctgggcgtgctgga
cgtacaggacctggaaaatgctatcgcctttacactgagagtgcttataggaatgagata
tccccaacctcaattccagagatacaaaggataaatcttggggttactacgcttatgatg
aaagcaatggggataaatgatcttctgtcttttgattttatggatccaccttcgcctcaa
gctcttatttctgccatggaacagctgtacagtcttggagctctagatgaggaggggctt
ctgaccaaattgggcaggaaaatggcagaatttccactggaacctccattatctaagatg
ctacttgccagtgtggaccttgggtgcagtgatgagattttgacaatcattgcaatgatt
cagacagggaacatcttctacaggcccagggaaaagcaagctcaggctgatcaaaagagg
gccaagttttttcagccagaaggagaccatctaactttgcttgctgtttatgaggcttgg
aaggcaaagaatttttccggaccgtggtgttttgagaactttgttcagtctcgatccttg
aggagggcacaagatgtgagaaaacaacttctcaccatcatggacaagtataaattggat
gttgttagtgctgggaaaaatttcacgaagataaggaaggcaattacagcgggtttcttt
ttccatgcagcaagaaaggacccacaggagggttatagaaccctagttgagaaccagcca
gtttatattcacccaagcagtgctcttttccagagacagccagactgggtcatctaccat
gaattggtaatgactacaaaggagtacatgcgagaggttacagttgtagaccccaaatgg
cttgtggaattggcaccaagattcttcaatgtggcagatcccacaaaaatgagcaaacgg
aagcgtcaagagcgtattgaaccactttatgacagatatcatgaacctaactcttggcgt
ttgagtaaacgtcgtgcttga
DBGET
integrated database retrieval system
