Vitis riparia (riverbank grape): 117919829
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Entry
117919829 CDS
T07274
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117919829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117919829
03019 Messenger RNA biogenesis [BR:
vri03019
]
117919829
Transcription machinery [BR:
vri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117919829
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117919829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
117919829
NCBI-ProteinID:
XP_034692982
LinkDB
All DBs
Position
8:complement(18092300..18101505)
Genome browser
AA seq
1086 aa
AA seq
DB search
MEMESSRRSFDRSREPGFKKPRLAEEAERGPNPNGRPFPQRPGATPAASRLKTNERDVDR
DDLGRGLYQQQHQELVTQYKTALAELTFNSKPIITNLTIIAGENLHAAKAIAATVCTNIL
EVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSIHPGMRHLFGTWK
GVFPLAPLQMIEKELGFPPAINGSSPGIATSRSDSQSQRPPHSIHVNPKYLEARQRLQQS
SRTKGAANDVTGTMVNSTEDADRLDRTASINAGRPWDDLPAKSIQHSHREAIGEPVEKKI
GAAYGDYEYGTDLSRNPGLGIGRPSEQGHDKPWYKAGGRVVETFSSQRNGFDIKHGFPNY
PAPRSANADAHLQPTQSTVNRSNSGMSRSWKNSEEEEYMWDDMNSKMTEHSAANHSKKDR
WTPDDSEKLDFENQLQKPQSIYDVGSSVDRETSTDSMSSEQREQGAFGHRMSSLWPLQEP
HSTDGLKHSGTSTLILGHSEGYPTVSGLSANASSSLARTGLRPLMGSSHAGASGFGFSTN
ASSGSTTGTVGQQRLQSVGAASPSGQSPMHQPDHLQVHSLPLPDLKASQFSGQFNIGSHK
QFTLDALPKLIQKAQLGDLQKLLPHNLQSLSPAVPSVPIRHHAPFSPQLQPDPSQPEPSG
QAQKTSLPQTSIFEAPSTIENPVLEHSNYPAAESTGKLSTSNLLAAVMKSGILSNSSVSG
SIPKTSFQDTGAVLQSVIQPPLPSGPPPAQFTSSGPRVATASLSGPSHDNKSASNLSQRK
VERPPLPPGPPPPSSLPGSGLPQSSNVTSNASNPIANLLSSLVAKGLISASKTESSTPVP
TQMPARLQNQSAGISTISPTPVSSVSVASSVPLSSTMDVVSHTEPAAKASVAVTQSTSVE
VKNLIGFEFKSDIIRESHPSVISELFDDLPHQCSICGLRLKLRERLDRHLEWHALKKSEP
NGLNRASRSWFVNSGEWIAEVAGFPTEAKSTSPAGESGKPLETSEQMVPADENQCVCVLC
GEVFEDFYSQEMDKWMFRGAVKITVPSQGGELGTKNQGPIVHADCITESSVHDLGLACDI
KVEKDP
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggaaagttctcgtagatcctttgatagatcgagagagccgggcttcaagaaa
cctcgattggccgaagaagccgagcgcggtccgaaccctaacggccggccgtttcctcaa
cgacccggagccactccggcggcgtcgaggcttaaaacgaatgaaagagatgtagacagg
gatgatttgggtcgcggactttatcagcagcagcatcaagagcttgtgactcagtacaag
actgcactcgcggagctgacattcaattcaaaaccgatcattaccaatttgacgataatt
gcaggggagaacctacatgctgccaaggccatagctgcaactgtctgcactaacattctc
gaggttcctagtgagcaaaagctgccatctctctatcttttagatagcattgtgaagaat
attggaagagattatatcaaatattttgctgccagactgcctgaggtattctgcaaggca
tatagacaagttgatccttctatacatcctggtatgcggcatctttttggaacgtggaaa
ggagtgttccctcttgcaccacttcagatgattgagaaagaacttggcttccctccagcc
atcaatgggtcatctccaggaattgcaacatctaggtctgattctcagtcacaacggcca
ccacacagtattcatgtaaatccaaagtatttagaggcacggcaacgtcttcagcagtcg
agtaggacaaaaggagcagccaatgatgttactgggaccatggtcaactccactgaggat
gcggataggttagacagaacagccagtatcaatgctggaaggccatgggatgatcttccg
gctaagagcatccagcattctcacagagaagcaataggtgagccggttgagaagaaaatt
ggtgcagcatatggagattatgaatatggtactgatctttcaaggaatcctggcttggga
attggtagacccagcgagcaaggacatgacaaaccttggtataaagctggtggtagggtt
gtggagacattttccagccaaagaaatggttttgatatcaagcatggatttccaaattac
ccagcacccagatctgcaaatgctgatgcacatctacagcctacacagagtactgtaaat
agaagcaattctgggatgtctaggagctggaagaactctgaggaagaggaatacatgtgg
gatgacatgaactctaaaatgacagagcatagtgcagccaatcactcaaagaaagatcgt
tggactcctgatgattctgagaaattggattttgaaaaccagcttcagaaaccacaaagc
atatatgatgttgggtcaagtgttgacagagaaacttccactgattcaatgtcctcagaa
cagagagaacagggagcttttgggcacaggatgtcatcactgtggccattacaggagcca
cattctacagatggactgaaacattcaggcaccagtacacttattttaggtcattcagaa
ggctaccctactgtcagtgggttgtcagcaaatgcaagttcttctctggccaggacaggc
cttagaccactgatggggtcatctcatgctggagcatcaggttttgggttttcgacaaat
gctagttcagggtctactactggcactgttggacaacaacggcttcagtctgtaggagct
gcatctccatctggacagtcaccaatgcaccagccagaccatctacaagttcattctttg
ccgctccctgatttaaaagcctctcaattttcaggacagttcaacatagggtctcataag
caatttactcttgacgctttgcctaaactaattcagaaggcgcagctaggtgacttgcaa
aaattgcttccccataatttgcagagtttatctcctgcagtgccatctgttccaataagg
caccatgctcccttttcaccacagctacagccagacccctcgcagcctgaaccttctggt
caagcgcagaaaacatcactacctcaaacctcaatctttgaagctccctcaacaatagag
aatcctgtgttagagcattcaaattatcctgctgcagaaagcacaggaaagttgagcaca
agtaatttgttggctgcagttatgaagagtgggatactatctaacagttctgtttctggt
agcattcctaaaacaagttttcaggatacaggggcagtgctacagtctgttattcagcct
cctttaccgagcggacctcctcctgcccagttcacatcctcaggacctagggttgcaaca
gcatctctatcaggtccctcccatgataacaaatctgcctcaaatctttctcagagaaag
gtagagcggccaccattgccacctggtcccccaccgccttcttctcttccaggcagtgga
ttaccacaatcttcaaatgttacgagtaatgcatcaaaccccattgctaatctcttaagc
tccttagttgctaagggcttgatatctgcatcaaaaacagagtcatcaactcctgtgcca
actcagatgcctgctcgactccagaaccagagtgcaggcatttctaccattagtcccaca
ccagtttcctcagtttcagttgcatcttctgttcctctttcatctactatggatgtggtt
tctcacactgagcctgctgctaaagcctctgttgctgtaacacaatccacctcagtggag
gtaaaaaacctcataggatttgagtttaagtcagatataattcgggagtcacatccatcg
gttataagtgaactctttgatgaccttccacatcagtgcagcatatgtggccttcggctt
aaacttagagaacgacttgatagacatttggagtggcatgctttgaaaaagtctgagcca
aatggtctaaatagagcatcaaggagttggtttgtaaactcaggtgaatggatagccgaa
gttgcaggatttccaactgaagctaagtccactagtccggcaggagagtctgggaaacct
ttggagacgagtgagcagatggttcctgcagatgaaaatcagtgtgtatgtgttttgtgt
ggtgaagtgtttgaagatttttatagtcaagaaatggataaatggatgttcagaggagct
gtgaagattactgttccgtcccaaggtggtgagctaggaactaaaaatcagggtcctatc
gtgcatgctgattgtataacagaaagttctgttcatgatttgggactggcttgtgatatt
aaagtggaaaaagatccataa
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