Vitis riparia (riverbank grape): 117922240
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Entry
117922240 CDS
T07274
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 35
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vri03041
]
117922240
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117922240
Spliceosome [BR:
vri03041
]
Complex C
Other components
Complex C specific factors
117922240
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-CCHC
SecA_DEAD
UTP25
Motif
Other DBs
NCBI-GeneID:
117922240
NCBI-ProteinID:
XP_034696186
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All DBs
Position
9:complement(8730430..8736354)
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AA seq
587 aa
AA seq
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MEEDDDYVEYIPVKKRRAMEAQRILQRKGKSSALEDEAEKSKLAEAKPSLLVKASQLKRD
LPEISPAEQIVQQEKEMIEHLSDRKTLMSVRELAKGITYTEPLLTGWKPPLPIRRMSRKE
CESIRKQWHIIVDGDEIPPPIKNFKDMRFPEPILKNLKAKGIVQPTPIQVQGLPVILSGR
DMIGIAFTGSGKTLVFVLPLIMVALQEEVSMPIVPGEGPFGLVICPSRELARQTYEVVEQ
FLVPMRECGYPELRPLLCIGGVDMRSQLEVVKKGVHIIVATPGRLKDMLAKKKLNLDNCR
YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVG
RAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEA
VAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIKHVINYDMPAEIENYVHR
IGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITDA
SGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRGEI
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagacgatgattatgtcgagtacattcctgtgaaaaagcgtagggcgatggaa
gcgcagagaatccttcagcgcaagggaaaatcttctgctcttgaagatgaagctgagaaa
tccaaactggccgaggcaaaacctagcttgcttgtaaaggcatcacagcttaagcgtgat
cttcctgagatcagtcccgctgagcagattgtgcagcaagagaaggagatgattgagcat
ctttcagacagaaaaactctgatgtcagtccgtgaattggcaaagggaattacttataca
gagccacttttgacaggatggaagcctcctctgcctattcgaaggatgtcaagaaaggaa
tgtgaatcaattcggaagcaatggcacatcattgtggatggtgacgagattcccccacct
ataaagaatttcaaggatatgagatttccggaaccaattttgaagaacttgaaagcaaag
gggattgtgcagccgacacccattcaagtacagggccttcctgtgattttatcgggtagg
gatatgattggaattgcctttacagggtcaggcaagacacttgtttttgtgttaccacta
atcatggtggctttgcaagaggaggtgtcgatgcctatagttcctggggaagggccattt
ggcttagtgatttgcccatcaagggaacttgcaagacaaacatatgaagttgtggagcag
tttttggttccaatgagggagtgtggttatccagaattgaggccattgctttgcattggt
ggagttgatatgcggtcacagttggaggttgtgaagaagggtgtacatattattgttgct
actccagggaggttgaaggatatgcttgcaaagaagaaactgaaccttgacaattgcaga
tatttaactctagatgaagcggatagattggtggatttgggatttgaagatgacataagg
gaggtgtttgaccacttcaaagctcaacgccaaacacttctgttttctgccaccatgccc
actaagattcagaattttgctagaagtgctttggtaaagcctgtaactgttaatgttgga
agggctggagcagcaaatcttgatgtgatccaagaagtcgagtatgtgaagcaagaggca
aagattgtttaccttcttgaatgcctacagaaaaccccacctcctgttttaatattctgt
gagaacaaggcggatgtcgatgatattcatgaatatctccttctaaaaggagttgaagca
gtggccattcatgggggcaaggatcaagaagagagagaatacgccatttcatccttcaaa
gctggcaagaaagatgtcctggttgcaactgatgttgcctcaaagggtttggattttcct
gatattaaacatgttattaattatgacatgccagcagaaatagaaaattatgttcacagg
attgggcgaacaggaagatgtggcaagacaggaatagctacaacatttataaacaagaac
caaagtgagacgacacttcttgatttgaaacatctattacaagaagcaaaacaacggatt
cctcctgttttggctgaactcaatgatccaatggaagatgtggatgcaattaccgatgca
agtggagtcaagggttgtgcttattgtggtggacttggtcatcgtatccgtgattgcccc
aagttagaacatcagaaaagcatggcaattgccagttctaggagggattattttggttct
gggggctacagaggggaaatatga
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