Vitis riparia (riverbank grape): 117925422
Help
Entry
117925422 CDS
T07274
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117925422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vri03400
]
117925422
Enzymes [BR:
vri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117925422
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
117925422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
PTCB-BRCT
DNA_ligase_A_C
BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
117925422
NCBI-ProteinID:
XP_034700316
LinkDB
All DBs
Position
11:complement(2933030..2986223)
Genome browser
AA seq
1162 aa
AA seq
DB search
MCEETKFSVLCSLFTWIQRSRTSAKKRSKFRIFLDTFCINGHQFSAIRLILPNLDRERGS
YGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANAGNFAMVAAEVLQRRQGMT
SGGLTIKELNDLLDCLASSENRTEKTSVLSTLIKKTNAQEMKWIVMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLAMRVADATAAWK
KLHGKEVVVECKFDGDRIQIHKNGEEIHFFSRNFLDHPEYKYAMSNIVAQNLLVDRCILD
GEMLVWDISLNRFAEFGSNQEIAKAAKEGLDSDRQLCYVAFDILYVGDTSVIHQTLKERH
ELLQKVVKPLKGRFEILVPSGGLNTHRPSGEPCWSLIAYDVDDVERFFKKTVENRDEGIV
LKDLGSKWEPSDRSGKWLKLKPEYVHAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLADRS
GPDTYPRRFISFCRVGTGLSDDELDAVVTKLKPYFRKNEYPKKAPPSFYQVTNNSKERPD
IWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDCVRYDKPWHECLDVQSFMELVH
SSNGTTQRGADYGRMQDGKPKRMKSSKKGEQKTAHVVPSHFMQTDVTNVKGETLIFSNMM
FYFVNTPPTHSLDSLHKLVVENGGTFSMNLNNSVTHCVAAQSKGIKYQAAKLRGDIIHCS
WVFDCCSQKKLLPLQPKYFLFLSEHSKKKLQEEIDKFSDSYYQDLDISDIKQLLSNVDRS
DNSKTIDYYKNKYCPKEKWSRFHDCCICFHSSIQSSNSDWELLSKLVLRRMKLEVSMGGG
KVGNNLSQATHLVVFSVPGFDLDFSDIMESFSPAEKHLLCNKKLHVVGYQWLEGCLEEGR
RLQEQKYSLKPEGLEESNFGECKHDIDVEAPSVLDSVENQNLLSFPDKEGKQGRGKAPPE
SISILALPKREEKRKRGRPAGPSTKKGKAGFSQARRTRPRIGKPPKIYENESDASDSGEK
MEEEGTKMGGNHAIHGVECKECPEIQETEIVEDSESSQRGKTEEKEVALDNVREKWLDRV
QDIELDSENKVDNSKKTEKLEVMVDPVQAMLLDMIPSLGAKKAESTNPIIDDEKPPVEQG
AEPVKKKKVSYKDVAGALLKDW
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgaagaaaccaagttcagtgttctgtgcagcctcttcacatggattcagaggagc
agaacctccgccaagaagcgctccaagttccgcatattcctcgacaccttttgcataaac
ggccaccagttcagcgccatacgattgatcctccccaacctcgaccgcgagaggggctcc
tacggcctcaaggagtccgtgctcgccacttgcctcattgacgccctcggcatgtccagg
gagtccgaggacgcccttcgcctcatcaactggcgaaaagggggtgctaaaaccggcgcc
aatgctggaaattttgccatggtcgcggctgaagtgctgcagcgccggcaaggaatgact
tctggtggactgacaatcaaggagttgaatgatttgcttgattgtttagcttcaagtgaa
aatagaacagagaagacttcagtcctttctaccctgatcaagaaaacaaatgcacaggaa
atgaagtggattgtcatgataattctgaaagacctgaagttgggaatcagtgaaaaaagc
atcttccatgaattccatccggatgcagaggacttgtttaatgtcacatgcgacttgaaa
cttgtttgtgaaaagctcaaggatcgaagtcaaaggcataaacgccaggatattgaagtt
ggaaaagctgtgcgaccccaactagctatgagagtagctgatgcaactgcagcatggaag
aagcttcatgggaaggaagtggttgttgagtgcaagtttgatggtgaccgcatccaaatt
cataagaatggagaagaaatacacttcttctcaaggaacttccttgatcaccctgaatat
aaatatgcaatgtcaaacattgttgcacaaaatcttttggttgataggtgtatacttgat
ggtgaaatgttggtatgggacatatcgctgaatcgttttgctgagtttggttcaaatcag
gaaatagcaaaggcagcaaaggaggggcttgacagtgatcggcagttgtgctatgttgct
ttcgacattctttatgttggagatactagtgtcattcaccaaaccttgaaggaacggcat
gagcttttgcagaaagtcgtgaagcctttgaagggtcgttttgaaatcttagtaccttct
ggtggtcttaatactcaccgtccttctggggaaccatgttggtcacttattgcttatgat
gtggatgatgtcgagaggttcttcaagaaaactgttgaaaatagagatgaaggcattgtt
ttaaaagaccttggttcaaaatgggagccaagtgacaggagtggaaagtggttaaagttg
aagcctgagtatgttcatgcaggttctgaccttgatgttcttataataggagggtattat
ggttctgggcgtcgtggaggagaggtagctcaattcttggtgggccttgctgaccgttca
ggccctgacacatatcccagacgattcatttccttttgcagagtgggtactggactttct
gatgacgagcttgatgctgttgtaacaaaattgaagccttatttcaggaaaaatgaatac
ccaaaaaaggcaccaccaagcttttatcaagtcacaaataattcaaaagagagaccagac
atttggattgatagccctgaaaaatcaattatactttctattactagtgatatccgaaca
ataaggtctgaggtatttgctgcaccatacagcctgaggttcccacgcattgattgtgtg
agatatgacaagccttggcatgaatgccttgatgtgcaatcttttatggaattggtacat
tcaagcaatggtaccacgcagagaggggcagattatgggcgcatgcaagatggtaaacca
aagcgcatgaaatcctctaagaaaggagagcaaaagactgctcatgttgttccttctcat
tttatgcagactgatgttaccaatgtcaagggcgaaacgctaatattttcgaacatgatg
ttttactttgttaatacacctccaacccattctcttgattccttgcataaattggtggtt
gagaatggaggaaccttctcaatgaatctgaataattcagttacacattgtgttgcagct
caaagtaaaggtatcaaatatcaggcagcaaagcttcgtggagatattattcattgttct
tgggtctttgactgttgttcacagaaaaagctccttcctttacagccaaagtactttctc
ttcctttctgaacattcaaagaagaagttacaagaggagattgacaaattttctgactcc
tactaccaggatcttgacatttcagacatcaagcagcttttaagcaatgtggataggtca
gacaactccaaaactattgattactacaagaacaaatattgtccaaaggaaaagtggtcg
cgctttcatgattgctgcatttgcttccactcctcaatacagtcttctaattcggattgg
gaacttctgtcaaaacttgtgctgaggaggatgaagcttgaagtttccatgggtggtggt
aaagttggcaataatctttctcaggccacccatttagtggtcttttcagtaccaggattt
gatttggacttcagtgacataatggaaagtttctcaccagcagagaaacatcttctatgt
aataaaaagttgcatgttgttgggtatcaatggttagaaggctgcttggaggaaggccgg
aggttgcaagaacagaaatatagcctgaaacctgagggcttggaagagtcaaactttgga
gaatgcaaacatgatatagatgtagaagccccttctgttttggacagtgtggagaaccaa
aatttgctgtcttttccagacaaagaagggaaacaaggtaggggaaaagctcctccagaa
agcattagtatcttggccttgcccaagagggaagagaaaaggaaaagaggaaggcctgct
ggcccaagcacaaagaaaggaaaagcaggtttcagccaagctcgaaggacacggccccgg
attggaaagccacctaagatatatgaaaacgaatcagatgcaagtgattcaggtgaaaaa
atggaagaggaagggaccaaaatgggagggaatcatgcaatccatggagtggaatgcaag
gaatgtccagaaatccaagagactgaaatagtagaagattctgaatcatcacaaagagga
aagacagaagaaaaggaggttgcactggataatgtacgtgaaaaatggttagatagagta
caggacattgaactggatagtgaaaataaggttgacaacagtaaaaagactgagaagctg
gaagttatggttgatccagttcaagccatgctactagacatgataccgagccttggagcg
aaaaaggcggaaagtacaaatcctattattgatgatgagaagcctccagtagagcagggt
gcagaacctgtgaagaaaaagaaagtcagctacaaggatgtcgctggagcactgctgaag
gattggtga
DBGET
integrated database retrieval system
