Vitis riparia (riverbank grape): 117927479
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Entry
117927479 CDS
T07274
Name
(RefSeq) THO complex subunit 1-like isoform X1
KO
K12878
THO complex subunit 1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03013
Nucleocytoplasmic transport
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117927479
09122 Translation
03013 Nucleocytoplasmic transport
117927479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117927479
03041 Spliceosome [BR:
vri03041
]
117927479
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117927479
Spliceosome [BR:
vri03041
]
Complex C
Other components
EJC/TREX
117927479
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117927479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
117927479
NCBI-ProteinID:
XP_034702884
LinkDB
All DBs
Position
13:complement(8551559..8583920)
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AA seq
500 aa
AA seq
DB search
MIFQLLEDLTEMSTMRNCKDIFAYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKAN
DVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDAPEGISIDFNFYKTFWSLQ
EHFCNPASISLAPTKWQKFTSNLMVVLNTFEAQPLSDEEGNANNLEEEAATFSIKYLTSS
KLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKELPSDSMKEEIKSCEERVKKLLEMT
PPKGKEFLHNIEHILEREKNWVWWKRDGCPPFERQPIEKKAVQDGAKKRPRWRMGNKELS
QLWKWADQNPNALTDPQRVRTPAVSEYWKPLAEDMDLSAGIEAEYHHKNNRVYCWKGLRF
AARQDLDGFSRFTEYGIEGVVPMELLPSDVRSKYQAKPSDRSKRAKKEETKGAAQQAEEN
QIATPASEIDGEGTRVDLEASAAPMDTDVTATTPTADENQKQSSDTDAGQEAGQSEADAE
AEAGMIDGETDAEVDLDAVG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgatattccagctattggaagatttaacagaaatgtctacaatgagaaactgtaaagac
atctttgcttatatagagagtaaacaagatatattggggaagcaagagctctttgcacgt
ggaaagcttgtgatgctgaggacgtgcaatcaacttcttcgtcgtctgtcaaaggcaaac
gatgtggttttttgtggacgaattctcatgtttctggctcatttctttcccttgtccgag
cgttcagctgtgaatataaagggggttttcaacacatctaatgaaacaaaatatgagaaa
gatgcccctgaaggaatttctattgatttcaacttttacaagactttttggagtttacag
gaacacttttgcaatcctgcttctatatctcttgctcctaccaagtggcagaaatttaca
tccaatttaatggttgtgttgaatacctttgaagctcagcctttgagtgatgaagagggc
aatgctaataatctggaggaagaggcagcaactttcagcataaaatatcttacaagcagt
aaactaatgggattagagttgaaagacccaagttttcgacgccatattcttgttcaatgc
ctcatattgtttgattatctgaaggcccctggaaagaatgacaaagagctgccatctgat
agtatgaaagaagagattaaatcttgcgaagagcgtgtgaagaaactgcttgagatgacc
ccaccgaaagggaaagagtttcttcataacattgagcatatactagaacgtgaaaagaat
tgggtatggtggaaacgtgatggttgcccaccatttgaaagacagccaatagagaagaaa
gctgttcaagatggtgccaaaaaacggccaaggtggagaatgggaaataaagaactctct
cagttgtggaagtgggcagatcaaaacccaaatgctcttactgatccacagcgtgtccgc
actcctgctgtctcagagtattggaaacccttggctgaagatatggacttatccgctgga
attgaagctgaataccaccataaaaacaaccgggtttattgctggaaaggtcttcgattt
gcagctcggcaggacttggatggattttctagatttactgagtatggaattgaaggggtt
gtgcctatggaacttttgccttcagatgtccggtccaaatatcaagctaaaccaagtgac
aggtctaaacgtgctaaaaaagaagaaacaaaaggtgctgcacaacaagcagaggaaaac
cagatcgcaacacctgcgagtgagattgatggggagggaaccagagttgatcttgaagcc
tcagcagcaccaatggacactgatgtcacagccacaactccaacagcagatgaaaatcag
aagcaaagctctgacaccgatgcgggtcaggaggcagggcagtcagaagcagatgctgaa
gcagaggctggaatgatagatggggagacagatgcagaggttgatttagatgcagttggc
tga
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