Vitis riparia (riverbank grape): 117929199
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Entry
117929199 CDS
T07274
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03013
Nucleocytoplasmic transport
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117929199
09122 Translation
03013 Nucleocytoplasmic transport
117929199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117929199
03041 Spliceosome [BR:
vri03041
]
117929199
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117929199
Spliceosome [BR:
vri03041
]
Complex C
Other components
EJC/TREX
117929199
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117929199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
HSM3_N
Herpes_UL92
Motif
Other DBs
NCBI-GeneID:
117929199
NCBI-ProteinID:
XP_034705364
LinkDB
All DBs
Position
13:complement(7617390..7664187)
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AA seq
597 aa
AA seq
DB search
MEIFKQALLKPGPPESFALQVVQEAIKPQKQTKLAQDENQLLENILRKLLQELVSCAVQS
GEKIMQYGQSIDDEEAIQSQIPRLLDIVLYLCEKEHVEGGMIFQLLEDLTEMSTMRNCKD
IFAYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSE
RSAVNIKGVFNTSNETKYEKDAPEGISLDFNFYKTFWSLQEHFCNPASISLAPTKWQKFT
SNLMVVLNTFEAQPLSDEEGNANNLEEEAATFSIKYLTSSKLMGLELKDPSFRRHILVQC
LVLFDYLKAPGKNDKDLPSDSMKEEIKSCEERVKKLLEMTPPKGKEFLNNIEHILEREKN
WVWWKRDGCPPFERQPIEKKAVQDGAKKRRPRWRMGNKELSQLWKWADQNPNALTDPQRV
RTPAVSEYWKPLAEDMDLSAGIEAEYHHKNNRVYCWKGLRFAARQDLDGFSRFTEYGIEG
VVPMELLPSDVRSKYQAKPSDRSKRAKKEETKGAAQQAEENQIATPASEIDGEGTRVDLE
ASAAPMDTDVTATTPTADENQKQSSDTDAGQEAGQSEAEAGMIDGETDAEVDLDAVG
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggaaatattcaagcaggccttactgaaacctgggccaccggaaagttttgctctccag
gtagtgcaagaggccataaaacctcagaagcaaacaaaactagctcaagatgagaatcaa
ttgttagaaaatattcttcggaaattacttcaggaacttgtgtcatgtgccgttcaatca
ggggagaaaattatgcagtatgggcaatcaattgatgatgaggaagcaatccaaagtcaa
attccacgccttttggacattgtgctgtatctttgtgagaaagaacatgttgagggtggt
atgatattccagctattggaagatttaacagaaatgtctacaatgagaaactgtaaagac
atctttgcttatatagagagtaaacaagatatattggggaagcaagagctctttgcacgt
ggaaagcttgtgatgctgaggacgtgcaatcaacttcttcgtcgtctgtcaaaggcaaac
gatgtggttttttgtggacgaattctcatgtttctggctcatttctttcccttgtctgag
cgttcagctgtgaatataaagggggttttcaacacatctaatgaaacaaaatatgagaaa
gatgcccctgaaggaatttctcttgatttcaacttttacaagactttttggagtttacag
gaacacttttgcaatcctgcttctatatctcttgctcctaccaagtggcagaagtttaca
tccaatttaatggttgtgttgaatacctttgaagctcagcctttgagtgatgaagagggt
aatgctaataatctggaggaagaggcagcaactttcagcataaaatatcttacaagcagc
aaactaatgggtttagagttgaaagacccaagttttcgacgccatattcttgttcaatgc
ctcgtattgtttgattatctgaaggcccctggaaagaatgacaaagacttgccatctgat
agtatgaaagaagagataaaatcttgtgaagagcgtgtgaagaaactgcttgagatgacc
ccaccgaaagggaaagagtttcttaataacattgagcatatactagaacgtgaaaagaat
tgggtatggtggaaacgtgatggttgcccaccatttgaaagacagccaatagagaagaaa
gctgttcaagatggtgccaaaaaacgtaggccaaggtggagaatgggaaataaagaactc
tctcagttgtggaagtgggcagatcaaaacccaaatgctcttactgatccacagcgtgtc
cgcactcccgctgtctcagagtattggaaacccttggctgaagatatggacttatccgct
ggaattgaagctgaataccaccataaaaacaaccgggtttattgctggaaaggtcttcga
tttgcagctcggcaagacttggatggattttctagatttactgagtatggaattgaaggg
gttgtgcctatggaacttttgccttcagatgtccggtccaaatatcaagctaaaccaagt
gacaggtctaaacgtgctaaaaaagaagaaacaaaaggtgctgcacaacaagcagaggaa
aaccagatcgcaacacctgcgagtgagattgatggggagggaaccagagttgatcttgaa
gcctcagcagcaccaatggacactgatgtcacagccacaactccaacagcagatgaaaat
cagaagcaaagctctgacaccgatgcgggtcaggaggcagggcagtcagaagcagaggct
ggaatgatagatggggagacagatgcagaggttgatttagatgcagttggctga
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