Veillonella rodentium: 44547418_01442
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Entry
44547418_01442 CDS
T05216
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vrm
Veillonella rodentium
Pathway
vrm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
44547418_01442 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vrm03400
]
44547418_01442 (mfd)
Enzymes [BR:
vrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
44547418_01442 (mfd)
DNA repair and recombination proteins [BR:
vrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
44547418_01442 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
DEAD
TRCF
CarD_TRCF_RID
ResIII
SecA_DEAD
RecG_dom3_C
TsaE
AAA_30
Motif
Other DBs
NCBI-ProteinID:
SNV71493
UniProt:
A0A239ZKU6
LinkDB
All DBs
Position
1:complement(1544149..1547445)
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AA seq
1098 aa
AA seq
DB search
MDNTFTELLSQNPSFADGLNAFQNKGKSVIYGLSGSQKSFLLSRAFADGPTKPFVIVVHD
KEHKEMWERDLAFFWPNVPVLSFPVTDHVDFTTVARSLEDQGAQMRALSLLAWQEPVVVL
ANAEEVTQYVVSPQYLKGQSLHFGLSDVIDRNTVLEQLVTIGYERVDQAEQRGHFAVRGD
ILDIYPVNSDDPIRIEFFGDEIDTLRFFSVESQRSVEQIESYTVTPFFLGNDDAESTLLS
YVKEGTLIYDEPGRIQEALKKFLKEDPTHRKMHCDWSALQRTADARTQIAFTFMQQRSIG
LGGFTAIGIQGKTMTSFERQIPLLTDEIEQWHRRHHQVVLVLNNQQRRKGIERALEQENI
PFIHSDTWISKPDTVVILQGLLTDGFELPNSHIVVVVEGNIYGQQKRKLRNKPKKGQEIN
YFTDLTVGDYVVHSVHGIGKYIGLKTIETEGIHRDYIEIAYAGTDKLFLPANHLDQLQKY
IGNEGDVPRIHKMGGGDWNKVVTKAKKSIDDLAEKLVELYAQREITEGFAFLPDQPWQQE
FEDAFPYEETADQLQATAEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQV
AVLVPTTVLAQQHYQTFVDRFSSFGVKVDVLNRFRSTAEKKQILKGVEDGSVDVLIGTHS
LLNKKVKFKDLGMLVVDEEQRFGVAQKEKWKEWAHNIDVLTLSATPIPRTLHMSLVGVRE
MSVINTPPEERLPVQTYVVEYDMNLIADAIKRELSRGGQVYFVYNRVASIEHMGELLADA
LPGLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLVSTSIIETGLDIPNANTIIIYDADRLG
LSQLYQMRGRVGRSRRRAYAYFMYRPDKMLSEAAEKRLKAIEEFTELGAGFKLAMRDLEI
RGAGNLLGSQQHGNIASVGFGMYVTMLEEAIAKAQNKEVERETAVDPAIDLEVDAFIDDA
YIKDSARKISVYQRLLRIKSKKDLDDMTDELIDRFGTPTDPVDRLLRIAQIKEQARLLGI
KSMVRREGQLIIHWYDDSKMADWDMGTVREDLWKKMKFVDTKPTTLYVSLNGMKGSILTI
TEAVMEALSQKSSTKESL
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggataatacatttacagaactgctttcacagaacccatcctttgcggatgggctaaat
gcatttcaaaataaaggaaaatcagttatatatgggctcagcggctctcaaaagagtttc
ttgttgagccgggctttcgcagacgggcccaccaagccgttcgtcatagtggttcatgat
aaggaacataaggagatgtgggaacgggatttagcctttttctggccgaatgttccggtg
ttatcatttcctgtaacggatcatgttgattttaccaccgttgcacgcagcctggaggac
cagggggcgcagatgcgggccttgagcctgttagcgtggcaggaaccggtagtggtgctg
gccaatgcggaagaggtcacccaatatgtggtgtcaccccaatatttgaaaggccaatct
cttcacttcggtttgagtgatgtgattgatcgaaataccgtactggaacagttggtgaca
attggatatgaacgagtggaccaggcagaacagcgtggtcattttgccgtgcgcggcgat
atattggatatttatcccgtaaatagtgatgaccctattcgtattgagttcttcggtgat
gaaatcgatacattgcgttttttctccgttgaaagtcagcgctccgtcgagcaaatcgag
tcctatacggtgacgcctttcttcttaggtaatgatgatgctgaaagtacgcttttatcc
tatgtaaaagagggaactcttatttacgatgaaccgggacggattcaagaggcattgaaa
aagttcctcaaggaggatccgactcatcggaaaatgcactgtgactggagcgccttgcag
agaaccgcagatgcgcggacacagattgctttcacatttatgcagcagcgttccatcggc
cttggcggatttaccgcaatcggtattcaaggcaagacgatgaccagttttgagcgtcag
attccgctgttgacggatgaaattgagcagtggcatcgccgacatcatcaagtggtgcta
gtccttaataaccagcagcgcagaaagggcattgagcgggctctggagcaggaaaatatt
ccttttattcatagtgatacctggatttctaaacccgatactgtcgttattttacaaggc
cttttaacagatggttttgaattgccgaacagccacattgtggttgttgtagagggcaat
atttacggacagcagaagcgcaaattgagaaacaagccgaagaaaggtcaggaaatcaat
tattttacggatctgactgtcggtgattatgtagttcacagtgttcacggtatcggcaag
tacatcggacttaagacgattgaaaccgaaggtattcatcgtgattatattgaaatcgcc
tatgccggtacggataaattgtttttgccggccaatcatctggatcagttgcaaaagtat
atcggcaatgaaggtgatgtgcctcgtatccataagatgggcggcggtgactggaataag
gtcgttacgaaggcgaaaaagtccatcgatgacttggcggagaaattggtggaattatat
gcacagcgtgagataaccgaagggttcgcgtttcttcctgatcaaccgtggcaacaagaa
tttgaagatgcatttccttatgaagaaacggcggatcaactgcaggcgacggcggaaatc
aaggagtcgatggaacgcccggtgcctatggacagacttctggcgggggatgtaggcttc
ggtaaaaccgaggtggctatgcgagccatctttaaagccgttatgagcggtaagcaggtg
gccgtgctcgtgccgaccaccgtattggctcaacaacattatcagacctttgtggaccga
ttctcttcgttcggagttaaggtggacgtattgaatcgattccgcagtacagccgagaaa
aagcagattctcaagggcgttgaggacggctctgtagatgtattgatcggtacgcattca
ttgctcaataaaaaggtaaagtttaaagatttaggtatgctcgtcgtcgatgaggagcag
cgattcggtgtagcacagaaggaaaagtggaaagaatgggcgcataatatcgatgtactc
accttgagtgccactccgattcctagaacattacatatgtcactcgtaggggtgcgggag
atgtccgtcattaatacgccgcctgaagagcgtctaccggttcagacctatgtggttgaa
tacgatatgaatctcatcgctgatgcgatcaagcgggagttatcccgagggggacaggtg
tatttcgtatataaccgcgttgcctctattgaacatatgggggaacttctggcagatgca
ttgccggggctacggtatgctattgctcacggtcagatgacggggcgtcaaatcgaagag
attatgaccgacttttatgaaggtcactatgatgtgctcgtatcgacgagtatcattgaa
acgggattggatattccgaatgcaaatacgattattatttatgatgcggaccgattggga
ttgtctcagctatatcagatgcgcggccgtgtggggcgctcgcgccgcagggcttatgcg
tatttcatgtatcgtccggataagatgttatccgaggcggcggagaagcgcttgaaagcc
atcgaggaatttacggaactcggagcaggttttaagctcgccatgcgcgatcttgaaatc
cgtggagcaggtaatttgttgggctcgcaacaacatggcaacatcgcatccgtcggcttc
ggtatgtatgtaacgatgctggaagaggccattgcaaaggctcaaaataaagaggtggaa
cgggagactgccgttgatcccgccatcgatttagaggtggatgcctttatcgacgatgcc
tatatcaaggacagtgcccgaaaaatctccgtatatcaacgattattgcgcattaagtct
aaaaaagaccttgatgatatgacggatgaactcattgatcgcttcggaacgccgacggat
ccggtggaccgtttgttgcgcatcgctcaaatcaaggagcaggctcgattattgggcatt
aagagcatggtacgccgtgaaggacagctcattattcactggtacgatgattcgaaaatg
gccgattgggatatgggcactgttcgtgaagatttatggaagaaaatgaaattcgtagat
acaaaaccgaccacattgtatgtgagcctcaacggtatgaagggttctattttaacgatt
acagaagcggtgatggaggcattgagtcagaaatcatcgacaaaggagagcctatga
DBGET
integrated database retrieval system