Vibrio ruber: RND59_20410
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Entry
RND59_20410 CDS
T09542
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vru
Vibrio ruber
Pathway
vru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RND59_20410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vru03019
]
RND59_20410
Enzymes [BR:
vru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RND59_20410
Messenger RNA biogenesis [BR:
vru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RND59_20410
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NACHT
AAA_19
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WNJ97561
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All DBs
Position
2:1063094..1064284
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AA seq
396 aa
AA seq
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MSFAKLGLSPPLLQAISELGYLQPTTIQSQAIPVILQEHDLIAAAQTGTGKTAGFVLPIL
NRLAQGQTQRKKRIRALILVPTRELAIQVAEKITQYGQYLPLTSLAIYGGVDEKPQKQHL
IEGVDILVATPGRLLDLYHQRAVYFEEVEVLVLDEADRMLDMGFIDDLNKILDRLPENIQ
HLLFSATLSHKVRDLAKTAVHNPHEITIAANQASKPNIEQWLITVDKDKKSALLAHLIQE
NQWDQALIFIETKHGAAKLVSQLEKRGIQAEAFHSGRSQAIRAKLLDDFKTGQIKYMIAT
GVAARGIDIDSLQRVINYDLPFPADEYVHRIGRTGRANASGEAISFVSKDNFKNLCMIES
RLGHLIERREIAGFEPKKPVPISILNYVPKHKRTQS
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgcgaaactcggactcagtcctcccctacttcaagctattagtgaacttggg
tatcttcagccaacgacgattcagagtcaggccattcctgtaattctacaggaacatgac
ctcattgctgcggcacaaaccggcaccggtaaaaccgccggatttgtccttccaatcctg
aaccggctcgcacaaggacaaactcagcgtaaaaaacgcattcgggctttgatattagtc
cccactcgagagctggcaattcaggtcgcggagaaaatcacccaatacggtcaatatctc
cccctgacatctctcgcaatttatggtggcgttgatgaaaaaccccagaaacaacacctg
attgaaggcgttgatatactggtggcaaccccggggcgactactcgatctgtaccatcaa
cgggcggtttacttcgaagaagtcgaagtgcttgtccttgatgaagcagaccgaatgctg
gatatgggatttatcgatgatctgaataaaattcttgatcggctgccagaaaatattcaa
cacctattattttcagcgacgttatcacataaggtccgtgatctggcgaagacagcggtc
cacaatccacacgaaattaccattgccgcgaatcaggcttctaaacccaatatcgaacag
tggttgatcaccgttgataaagacaaaaaatcagcactgctggctcatctgattcaggag
aaccaatgggatcaagcactcatcttcattgaaaccaaacatggtgcagccaaactggtc
agtcagttggagaaacgcggtattcaggccgaagcctttcatagtggtcgtagccaggca
atccgagccaaattactggatgattttaaaaccggccagatcaaatatatgatcgcaacc
ggtgtagcagcccgaggtatcgatattgattcactacaacgagtgatcaactacgatctg
ccttttcctgcggatgaatatgtgcaccgcatcggccgaaccggaagagccaatgcatcc
ggtgaagcgatctcctttgtttctaaagataattttaaaaatttgtgcatgattgaaagc
cgccttggtcacttaatcgagcgtagagaaattgccggattcgaaccgaaaaaaccagtt
ccgatctctattctgaattatgtaccaaaacataaacggactcagtcatag
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