Aliivibrio salmonicida: VSAL_II0696
Help
Entry
VSAL_II0696 CDS
T00782
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vsa
Aliivibrio salmonicida
Pathway
vsa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VSAL_II0696 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsa03400
]
VSAL_II0696 (mfd)
Enzymes [BR:
vsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VSAL_II0696 (mfd)
DNA repair and recombination proteins [BR:
vsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VSAL_II0696 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAQ81450
UniProt:
B6ERW6
LinkDB
All DBs
Position
2:762036..765491
Genome browser
AA seq
1151 aa
AA seq
DB search
MPITNLLSLSLPTKANDTRSVGNLTGSSLALAIAEIEQQHTGPIVVAVTEPQLAFRLQNE
INQFSQQSVEVFPDWETLPYDSFSPHQDIISDRLSRLYHLPKQKNGTLIVPVSTLLQRQS
PQSFLHKHALVVKVGDHLSFDKLKLQLEKSGYLHVDQVMSHGEYASRGSILDLFPMGNSL
PYRIDFFDDEIDTIRQFDPDNQRTIEEVKSINLLPAHEFPTDDVAIEDFRIRWRQRFDAR
REPESVYQQISKGAWPAGIEYWQPLFFDETETLFDYLPDNTLLVTIGDIEKAADDFLADA
EYRYEQRRVDPLRPLLPVNELWLRTTDMFGFFKHYPRIKLAKEPEIEKAGRFNPDLLELP
EIAIQHQNKEPFAQFRQFYEKFSGQVIFSVESEGRREALLELLARIKLKPSICDSLKDAV
AHKNKATLVIGSAERGFILQNPCVAFICESDLLGERVIQRRRRGDNKAVNSNTIIRNLAE
LKVGQPVVHLDHGIGRYMGLQTLDVGDMPAEYMMLEYLNETKLYVPVSSLNLISRYSAGA
DDSAPISKLGSDAWGKARRKAAEKVRDVAAELLDVYAKRAIKLGFAFKQDKEAYADFRSS
FPFEETHDQEIAINDVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATNNEKQVAVLV
PTTLLAQQHFENFRDRFANFPIRVEVLSRFKSAKEQKEILAATAEGKVDILIGTHKLLQD
SIKFDDLGLLVVDEEHRFGVRQKEKVKAMRSDVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPARRLAIKTFVREKADDVIKEAILREIKRGGQVYVLHNNVETIESAAKDIENLIPEA
RVTLAHGQMRERELERIMGDFYHQRFNVLVCTTIIETGIDVPTANTIIMERADKLGLAQL
HQLRGRVGRSHHQAYAYLLTPHPKALSKDAVKRLDAIASLEDLGAGFTLATHDLEIRGAG
ELLGDGQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDDLLREQTEVELRLPALIPEEY
IPDVNTRLSLYKRIASVSSNGELDELKVEIIDRFGSLPEAAQTLLISAEVKMLAASIKVK
KLEAHGNGGYIEFEPTADINPMFLVGLLQKDPTGFALDGPTKIKFIKDLTERQVRIKYVM
DLLNLFNENRI
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgcctattactaatttactgtcattatcattaccaacaaaagccaatgatacccgctct
gttggtaatctaacgggctcatctcttgcacttgctattgcagagatagagcaacaacac
actggtcctatcgtggttgcggttaccgagccacaattggcgtttcgtttacaaaatgaa
attaaccaatttagccaacagtctgtcgaggtttttcctgattgggaaacacttccttat
gacagtttctcaccgcatcaggacattatttcagatcgcttatcgcgcttatatcatttg
cctaagcagaagaatggcacgctaatcgttccggtaagtaccttattgcagcgacaatca
ccacaatcttttctgcacaagcacgccttagtagtaaaagtaggtgatcatctgtcgttt
gataaactcaagctgcaattagaaaaatcaggctacttgcacgttgatcaagtcatgagt
catggtgaatacgcaagccgagggtccatattagatttattcccaatggggaattctctg
ccttatcgtatcgacttttttgatgatgaaattgataccatccgtcagtttgaccctgat
aatcaacgcacgattgaagaagtaaaatcaatcaatctactccctgctcacgaattccca
acggatgatgtagcgattgaagatttccgtattcgttggcgtcagcgttttgatgcgcgc
cgtgaaccagaatccgtttatcaacaaatcagtaaaggggcttggcctgctggtatcgaa
tactggcaacctctgttttttgatgaaacagaaaccctatttgattatctaccagacaac
acgttattagtgacgattggtgatattgaaaaagccgcagatgatttcttagcggatgct
gaatatcgttacgagcaacgtcgtgttgatcctcttcgccctcttcttcctgtgaatgaa
ttgtggttaagaacgaccgatatgtttggcttcttcaaacactatccacgaatcaaatta
gcgaaagaacctgagattgaaaaagccggtcgttttaatcctgatttattagaattgcct
gaaattgctattcaacatcagaataaagaaccgtttgctcaattccgtcagttctacgaa
aaattcagtggccaagtcatcttctctgttgaatcagaaggtcgccgagaagcattatta
gaattattagcacgtattaagctaaaaccttctatttgtgattccttaaaagacgccgta
gcgcataagaacaaagcgacgttagtgatcggttctgctgagcgtggtttcattcttcaa
aacccatgcgttgcctttatttgtgaaagtgacctactgggtgagcgcgtaatacagcgt
cgtcgacgtggtgacaacaaagccgttaatagcaataccatcattcgtaaccttgctgaa
ctaaaagtcggtcaacctgtcgttcacttagatcacggtattggtcgttatatggggctt
caaacattagatgttggtgatatgccagcagaatacatgatgttagagtacctaaacgaa
acgaaactgtatgttcccgtgtcttcacttaatctcattagccgttactcagccggcgca
gatgattctgcaccaatcagtaagctaggcagtgatgcatggggcaaagctcgtcgtaaa
gccgcagagaaagtccgcgatgtagccgcagagctattggatgtttacgccaagcgcgcc
attaaacttggatttgcctttaaacaagataaagaagcttacgctgatttcagatcaagc
tttccgtttgaagaaacgcacgaccaagaaattgcgattaacgacgttttatctgatatg
tgccaagcaaaagcaatggatcgtctagtttgtggtgatgttggctttggtaaaacagaa
gtcgcaatgcgtgccgcgttcttagcaacaaacaatgaaaaacaagtggccgtattagtt
cctacgaccctacttgctcaacagcattttgaaaatttccgagaccgtttcgctaacttc
cctattcgtgtggaagtattatctcgattcaaatcagccaaagaacaaaaagaaatttta
gcggcaactgcagaaggtaaagttgatattctgatcggtacgcacaaattattacaagac
agtattaaatttgatgatcttggtttattggttgtggatgaagaacaccgctttggggtt
cgtcaaaaagaaaaagtaaaagcaatgcgttcggatgttgatattctgaccctaaccgcg
acccccattccaagaacattaaacatggcaatgagtggcatgcgtgatttatctatcatc
gcaacgcctccagctcgtcgtttagcgatcaaaaccttcgtgcgtgaaaaagccgatgat
gtcattaaagaagcgattcttcgtgaaatcaaacgtggtggccaagtctatgtcttacat
aataatgtagagaccattgaaagcgcggcgaaagacattgaaaacctgatccctgaagcg
cgagttactttggctcacggtcaaatgcgtgagcgtgaattagagcgcatcatgggtgat
ttttatcatcaacgttttaatgttttagtctgtacgaccattatagaaaccggtatcgat
gttccaacggccaataccattattatggagcgtgccgataaactgggtctagcgcaatta
caccaactgcgtgggcgtgttggtcgttctcaccaccaagcgtatgcgtatttactaacg
cctcatccaaaagcactaagcaaagatgccgttaagcgtttagatgctatcgcgtctctt
gaagacttaggagccggttttactctagcaacacacgatttagaaatccgtggtgcgggt
gaattactgggtgatggacaaagtgggcaaatccaatccgttggttttacgctttacatg
gaaatgctagaacaagccgttgaagcattaaaagaaggcaaagagccctctttagatgat
ttattacgagaacaaaccgaggtcgaattacgcttacccgcgttaattccagaagagtat
atcccagatgtcaatactcgactgtctctctataagcgtattgctagtgtttcaagcaat
ggcgaattagatgagcttaaagttgaaatcattgaccgttttggctctttacctgaagcg
gcacaaacattattaatcagcgcagaagttaaaatgcttgctgcatcgataaaagtgaag
aaattggaagctcacggcaatggcggttacatcgaatttgaaccaacggcagacattaat
ccaatgttcttagttggattactgcaaaaagacccaaccgggtttgctttagatggaccg
actaaaattaaatttataaaagacttaacagagagacaagtgcgaattaaatacgtaatg
gacttgctcaatttgtttaacgaaaatagaatctag
DBGET
integrated database retrieval system
