Vibrio mediterranei: BSZ05_00950
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Entry
BSZ05_00950 CDS
T04936
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vsh
Vibrio mediterranei
Pathway
vsh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSZ05_00950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsh03400
]
BSZ05_00950
Enzymes [BR:
vsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSZ05_00950
DNA repair and recombination proteins [BR:
vsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BSZ05_00950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ASI88491
LinkDB
All DBs
Position
1:208328..211786
Genome browser
AA seq
1152 aa
AA seq
DB search
MSNCQLLPLNAPTGASDKKFLGNLIGGALALAISEHANAYNDHSLLVVPDPQLALKLQGE
LEQFFPGEIALFPDWETLPYDNFSPHQDIISDRIARLYALPQQSKGITIVPVSTLLQRQS
PRDFLMQHTLMVKTGDLFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSA
PYRIDFFDDEIDTIRTFDPENQRSIEDISEIRLLPAHEFPTTKDAIEEFRVRWRQQFDAR
REPESVYMQVTKGTWPAGIEYWQPLFFEHTETLFDYISQDSQIIAVGDIESAIDTFLSDV
ETRYEQRKVDPLRPLLEPSALWLQKDEFYSQLKAYPQLLCSVDSVDEKAGRVNAPVEALP
DLAVQHQLKEPMAQIRQFTEQYAGKVIFSVESEGRREALLELLHRIKLRPQEKEHFLDAL
KSDDKFTLVIGQCEHGFAYQQQFALICESDMLGDRVIQRRKKEKRSINSDTVIRNLAELK
PGQPVVHIDHGIGRYVGLQTLEAGGMTTEYVTLEYQNDAKLYVPVASLNLIGRYSGGAEE
SAPLNKLGSESWAKARRKAAEKVRDVAAELLDVYAKRELKPGFKFSLDRDQYATFKAGFP
FEETDDQAQAINAVMSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPT
TLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKAILQDVADGKVDIVVGTHKLLSSDI
QFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIAT
PPARRLAIKTFVRQSEDSVVREAILREIMRGGQVYFLHNQVETIEKVAADLEKLVPEARV
TVAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLHQ
LRGRVGRSHHQAYAYLLTPHPKAMTKDAVKRLDAIASLEDLGAGFTLATHDLEIRGAGEL
LGDEQSGQIQSVGFSLYMEMLEQAVEALKEGKEPSLDDLLREQTEVELRIPALLPDDYIP
DINTRLSMYKRIASVIDNEELDELKVELIDRFGLLPDAAKHLLAVSQMKLRGRGLKVKKV
EAHDKGGYIEFYPDADINPAFLVKLLQAQPTKFAMEGPTKFKFMEALTDRRKRLSYLNNM
LDEFEANRLPNA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgagtaattgtcaactacttcctcttaatgcaccaacgggtgccagtgataaaaagttt
ctcggtaacctgattggtggcgcattagcccttgctatcagcgagcatgctaacgcctat
aatgatcattctttactggttgtgccagacccacagcttgcacttaaacttcaaggtgaa
ctagaacagttctttccaggagagattgcgctatttcctgactgggaaaccttgccatac
gataatttctcaccgcatcaggatataatttcagatcgtattgcacgactatacgcccta
ccgcaacagtcaaaagggatcactatcgtcccggtaagcactttgttgcaaaggcaaagt
cctcgcgatttcttaatgcaacataccttgatggtaaaaactggtgatttgttttcactg
gataagctacgtctacagttagaaaactctggctaccgccatgtagaccaagtgtttggt
cctggtgaatatgcaagtaggggttcaattctcgatctcttccctatgggaagctctgcg
ccttatcgcattgatttctttgacgatgaaatcgacactattcgcacctttgacccggaa
aaccaacgttccattgaagatattagcgagattcgactcctcccagctcatgagtttcct
acgacaaaagacgcgattgaagagtttcgtgttcgctggagacaacaattcgacgcaagg
cgcgaaccagagtcagtctacatgcaggtaacaaaaggcacttggccagcgggtatagag
tattggcagcctctgttctttgagcatactgaaacgctatttgattacatcagtcaagac
tcccaaattattgcggtgggtgatattgagtccgccatagatacctttttgtctgacgtg
gaaacacgttatgagcagcgaaaggtcgaccctttgcgcccactgttagaaccgagtgcg
ctttggctgcaaaaagatgagttctattcacagctaaaagcctatccacaattgctgtgc
tccgttgattccgtggatgaaaaagcaggacgcgtcaatgctcccgtcgaggcacttcct
gatttagcagtacagcatcaattaaaagagccgatggctcaaatccgtcagtttactgag
cagtacgctggtaaagtaattttctcggtggaatccgagggccgtcgagaggcactgctc
gaattactgcatcgcataaaactgaggccacaagagaaagaacattttctcgatgcgctg
aagagtgacgataagttcacacttgttattggccaatgtgaacatggttttgcttatcaa
cagcagttcgctctgatctgcgaaagtgacatgctcggcgatcgcgttattcaacgacgc
aagaaagaaaaacgctcgattaatagtgacacggtcattcgcaaccttgctgaactcaag
ccaggccaacccgttgttcatattgaccacggtattggccgctacgtcggcttgcaaaca
cttgaagcgggcggcatgacgacagaatacgtcacactcgaataccaaaacgacgccaag
ctgtacgtccctgtcgcttcactgaacttaattggacgctactctggtggcgcggaagaa
tcggccccactcaacaaattaggcagtgaatcttgggctaaagcccgcagaaaagccgct
gaaaaagtgcgcgatgtcgcggcagagttgctcgacgtatacgccaagcgcgagttgaaa
cctggctttaaattcagcttagatcgtgaccaatatgcgacctttaaagctggtttccca
tttgaagaaactgacgaccaagcacaagccatcaatgctgtgatgtctgatatgtgtcag
cctaaagccatggatcgtttggtttgtggtgatgttggcttcggaaaaacagaagtcgca
atgcgcgcagcatttgtggcaaccgacaacggtaaacaagtcgcggtgctggttcctacc
acactgctggcacagcaacattttgagaacttccgcgatcgatttgccaacctgccaatc
cgggttgaagtcttgtcgcgctttaaatcggccaaagagcaaaaagccatcctacaagac
gtcgccgatggaaaagtggatattgtcgttggcacccacaaactgctctctagtgacatt
cagtttaaagatcttggcctactcatcgttgatgaagaacatcgatttggggtgagacaa
aaagagaaagtgaaagcgatgcgtgccgatgtcgacattttgaccttaacagcaacgcct
attccacgaacactgaatatggccatgagtggcatgcgcgacctttccatcattgctaca
ccgccagcgagacgtcttgccattaagacctttgtgcgtcaaagcgaagacagtgttgta
cgcgaagcaatacttcgtgaaatcatgcgtggtggtcaggtctatttcctccacaatcag
gttgaaaccattgaaaaggtcgcggcagacttagaaaagttagtccccgaagcacgcgtc
acagttgcccacggccaaatgcgtgaacgtgaactagagcgagttatgaatgatttctat
catcaacgttttaatttactagtatgtacgaccatcattgagacgggcatcgacgtgcca
accgccaacaccatcatcatggatcgtgctgataaccttggcttagcgcagcttcaccag
cttcgtggacgcgtaggtcgctcacaccatcaggcgtatgcttatctgctgactcctcat
ccaaaagccatgacaaaagatgcagtaaagcgattagacgctatcgcctcactagaagat
cttggggccggctttactctagcgactcatgaccttgaaattcgtggcgctggagagctt
ttaggggatgaacagagtggccaaattcagtccgttggattctcactctatatggaaatg
ttagagcaagccgtggaagcgctaaaagaaggcaaagagccatctttggacgatctactt
cgcgaacaaaccgaagtggaattacgtatccccgctttgctccctgatgactatattccg
gatatcaatactcgtctatctatgtataaacgaatcgcaagcgttatagataacgaagag
ctcgacgagctaaaagtggaacttattgatcgatttggcctgctgccagatgctgccaaa
caccttcttgccgtctcacaaatgaagcttcgtggtagaggactgaaagttaaaaaagta
gaagcccatgataaaggtggctatattgaattttatccggatgctgacattaacccagcc
ttcttggttaaactacttcaagcgcagccaacgaaatttgcgatggaagggccaactaag
ttcaagtttatggaagcgttaaccgataggcgcaaacgcttaagttacctcaataacatg
cttgacgagtttgaggccaatcgacttcctaacgcataa
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