Vibrio mediterranei: BSZ05_05880
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Entry
BSZ05_05880 CDS
T04936
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vsh
Vibrio mediterranei
Pathway
vsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSZ05_05880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsh03019
]
BSZ05_05880
Enzymes [BR:
vsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSZ05_05880
Messenger RNA biogenesis [BR:
vsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSZ05_05880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
SNF2-rel_dom
NodS
Motif
Other DBs
NCBI-ProteinID:
ASI89369
LinkDB
All DBs
Position
1:1282383..1283675
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AA seq
430 aa
AA seq
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MKKTHITEQKFAELDLQPQIIEGLEKKGFEYCTPIQALALPVLLAGRDIAGQAQTGTGKT
LAFLTATFNHLLTTPEHDGRKPNQPRAIIMAPTRELAIQIQNDAKPLIESTGLKTALAYG
GDSYDKQLAKLEEGVDILIGTCGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIKEELFYPSN
NEKMALLQTLVEEEWPDRAIIFANTKHKCEKVWGHLAADGHRVGLLTGDVPQKKREKILE
QFTRGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEEYAINLPAIEEYIEHQIPVSDYDSSALLTELPAPLVLKSRNSGQRRTNTGGSRPSNRK
PQRRPRAQRS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgaattagatttgcagccgcaaatc
attgaaggattggaaaaaaaagggttcgaatattgtacccctatccaagccttggcgttg
ccggtactgctcgccggccgagatattgcaggacaggcccaaaccgggactggaaaaacg
cttgcgtttttaactgctacctttaatcacctactaacaacgccagaacatgatggccgc
aagccaaaccagccgcgtgcgattatcatggctccaactcgcgaacttgctatccagatc
caaaacgatgccaagccgttaattgagagtacagggttaaagactgcactcgcctatggc
ggcgacagctacgataaacagctggctaaactcgaagaaggcgtcgatatccttatcggt
acctgtggtcgtattatcgatttctacaaacagcgtgtcttcaatctcaacaacattcaa
gcagtggtattggatgaagccgaccgcatgttcgatcttggtttcattaaagatattcgc
tttttgttccgccgcatgcctgagcccaaagaccgtttgaacatgctgttctctgcaaca
ttgtcttatcgcgttcaagaactggcattcgaacacatgcacaaccctgagcacgtcgtt
gtcgagccagagcaaaaaactggtcaccgaattaaagaagagctgttctacccatcgaac
aatgaaaaaatggctctgctacagacactcgtggaagaagaatggccagaccgcgctatc
atctttgctaacactaaacacaagtgtgagaaggtttgggggcacctagctgccgacggc
caccgtgtcggcctgctgactggtgatgttcctcagaagaaacgtgagaaaatcctagag
caatttactcgtggtgatgtcgatattctggttgctactgatgtggcagctcgtggtctg
catattcctcaagtaactcacgtatttaactacgacttgcctgacgattgtgaagattac
gttcaccgtattggccgtactggccgtgctggtgcaagtggtcactccatcagctttgct
tgtgaagaatacgcaatcaatttgccagcgattgaagagtacattgagcaccaaatcccc
gtctcagactacgattccagtgcactacttacagaactacctgcgccactagttctgaaa
agccgtaactcaggtcagcgccgtaccaacactggtggctcaagaccgtcaaacagaaag
cctcaaagaaggccaagagcgcaacgatcttaa
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