KEGG   Vulcanisaeta souniana: Vsou_07180
Entry
Vsou_07180        CDS       T08588                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
vso  Vulcanisaeta souniana
Pathway
vso03030  DNA replication
vso03410  Base excision repair
vso03420  Nucleotide excision repair
vso03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vso00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Vsou_07180
   03410 Base excision repair
    Vsou_07180
   03420 Nucleotide excision repair
    Vsou_07180
   03430 Mismatch repair
    Vsou_07180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vso03032]
    Vsou_07180
   03400 DNA repair and recombination proteins [BR:vso03400]
    Vsou_07180
Enzymes [BR:vso01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Vsou_07180
    6.5.1.6  DNA ligase (ATP or NAD+)
     Vsou_07180
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Vsou_07180
DNA replication proteins [BR:vso03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Vsou_07180
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Vsou_07180
DNA repair and recombination proteins [BR:vso03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Vsou_07180
   NER (nucleotide excision repair)
    Other NER factors
     Vsou_07180
   MMR (mismatch excision repair)
    Other MMR factors
     Vsou_07180
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Methyltransf_15 Phage_TAC_10 DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: BDR91625
LinkDB
Position
complement(680295..682115)
AA seq 606 aa
MSSGNDIKFIDVVRVLESIEATTQRTVMAKLLSSLLKKSPPDVIDKVIYFILGQLRPDWE
GVELGVAEKFTFRSIANATGASVKQVEDLYKKLGDIGETAKRIMSSKPQQGGGKSILDFF
GGGGGEELTMGKVYDTLMSIARASGEGAQDTKVKLLTYLFSRAKPEEAKYIARFVIGKLR
LGVADMTILDALSDAYKVPRDALERAYHIYPDLGYIAKMVAREGQNALAKIHVTPGVPIQ
PMLAERLSTASEILAKLGGVAMVEYKYDGERAQVHRTRDGEVRIFSRRLENITYAYPDVA
EYVKEAIDAKEFIVEGEIIAIDPDTGEFRPFQELMHRKRKHDIKEAMKEYPVNIFLFDTM
YVDGQDLTNLPLIDRKRKLLEILKPSDYVHLATWRVINDAEELDKFFHEAISDGCEGVMC
KSIKADSVYEMGARGWLWIKYKRDYRSELTDTLDLVVVGAFWGRGKRAGAYGALLIAAYD
PKTDQFYTVSKVGSGFTDEDLVKLKQMLDPYRIPHRHPRVVSKMEPDVWFVPAVVLEIIG
AEITLSPLHTCCMGTVRPDVGLAIRFPRFTGRYRTDKSPEQATTVDEILEMYRGQKKVKI
EEGANP
NT seq 1821 nt   +upstreamnt  +downstreamnt
atgtctagtggtaatgatattaagttcattgatgttgtgagagttcttgagagtattgag
gcgactacccaaaggactgtcatggccaagttactatcctccctcctaaagaagtcgcca
ccggatgttattgataaggttatttacttcatacttggccagttaaggcctgattgggag
ggtgtagaacttggtgttgctgagaaattcacctttaggtctattgccaatgccactggg
gcctctgttaagcaagtagaagatttatataagaagcttggcgatattggcgaaaccgca
aagaggataatgagtagtaagcctcagcagggtggtggtaagtcaatactggacttcttt
ggcggcggaggtggtgaggagttaactatgggtaaggtttatgatacattgatgtctata
gccagggcgagtggtgagggtgctcaggatactaaggttaagcttctaacatacctattc
tcaagggctaagcctgaggaggccaagtatattgcaaggtttgtaattggtaagctgagg
ctcggggttgccgacatgactatactggatgcattgtcagacgcctacaaggtgcctaga
gatgccctagagagggcttaccatatttacccggacctcggttatatagctaagatggtt
gcccgagagggccagaatgccctggccaagatccatgtgacgccgggtgtacccatccag
ccaatgcttgcagagagattgagtacggcctctgagatcctggctaaactcggtggtgtt
gcaatggttgagtataagtatgatggcgagagggcacaggtgcataggactagggatggc
gaggttaggatattcagtaggagacttgagaatattacgtatgcttatccagacgttgct
gagtatgttaaggaggccattgatgccaaggaattcattgttgagggtgagataattgcc
attgacccggacacgggtgagtttaggcccttccaggagttgatgcataggaagaggaag
catgatattaaggaggctatgaaggagtatccagtcaatatattcctgtttgatactatg
tatgtagatgggcaggatttaacgaacctaccactgattgataggaagagaaagttactc
gagatcctcaagccaagtgattacgttcatctagctacctggagagtgattaatgatgca
gaggagcttgataagttcttccatgaggccataagcgatggttgtgagggggtcatgtgc
aagtccattaaggccgactcagtctatgaaatgggagcaaggggctggctctggattaag
tacaagcgtgactacaggagtgagttgacggataccctggacttagtggttgttggtgcc
ttttggggacgtggaaagagggctggggcctacggagcattattgattgcggcttatgat
ccgaagactgatcaattctatacagtgagcaaggtgggtagtggattcaccgatgaggac
ttggtgaagctcaagcaaatgctcgatccatacaggatacctcataggcacccaagggtt
gtctctaaaatggaacccgacgtgtggttcgtaccagccgtcgttcttgaaataatcggt
gcagaaataaccctaagtccgctccatacctgttgcatgggaaccgttagaccagacgtt
ggtttagccattaggttcccaaggttcacagggcgctataggacggataagtcacctgag
caagcaaccacggttgacgagatacttgagatgtatagggggcagaagaaggttaagata
gaggagggggctaatccctag

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