Vibrio atlanticus: VS_0350
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Entry
VS_0350 CDS
T00812
Name
(GenBank) RNA polymerase associated protein rapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
vsp
Vibrio atlanticus
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsp03021
]
VS_0350
Transcription machinery [BR:
vsp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
VS_0350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
AAA_34
Helicase_RecD
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
CAV17359
UniProt:
B7VIC2
LinkDB
All DBs
Position
1:349584..352493
Genome browser
AA seq
969 aa
AA seq
DB search
MTFALGQRWISDTESDLGLGTVVAMDARTVTVMFAASEENRVYARTDAPVTRVAFNVGDV
IECQEGWSLSVEEVIEDKGLLTYLGTREDTQETEVTLREIFLSNQIRFNKPQDKLYAGQI
DRMDNFVLRYRALSNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLSGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCIESFA
ESDNPFDTQQYVLCSLDFLRKSRKRYEQALEGEWDLLVVDEAHHLEWSQDKPSREYQVVE
GLAENTSGVLLLTATPEQLGRESHFARLRLLDPDRFYDYEAFVEEEDQYAPVADAVTALF
SGVKLENSAKNQITELLSEQDVEPLFRVIEGDSSEEEQALARQELIDNLMDRHGTGRVLF
RNTRAAIKGFPKRNVNLLPMDIPTQYTTSMRVSGMIGGKMAPEARAMKMLYPEEIFQEFE
GEDSSWWQFDSRVNWLIEKIQDKRSEKILVIASRASTALQLEQALREREGVRATVFHEGM
SILERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD
RIGQLRDIDIHVPYLKGTSQAILARWFDEGLNAFAETCPTGRTVYDKYSDVLIEMLASGN
TEQLDEVIEESAKLNQSLKSDLEKGRDRLLEMHSNGGDKAHEIAEKIASTDGDTNLVTFA
LSLFDTIGLNQDDKGENALVVTPSEHMMVPSYPGLPYEGATITFDRETALSREDMNFISW
EHPMIQGGIDLLLSEGVGASAVSLLKNKALPVGTILLELVYLVDAQAPKRSGISQFLPKT
PIRLMMDGRGNDLSAQVEFDSFNRQLSPVNRHLASKLVNSVQGEIHKLIEAGETHVLPKV
EEVRQQAQKDMQTNLNGELERLQALKAVNPNIRDEELEVIEAQINELTGYISKAQVQLDS
LRLIVVSHN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgctttggggcaacgctggataagcgatacggagagcgatttaggtttaggt
accgttgtagcaatggatgctcgcacagtaacagtaatgtttgctgcgtcagaagaaaac
cgcgtctatgcacgcacagatgctcccgtaacccgagtggcgttcaatgtaggcgatgtc
atcgaatgccaagaaggttggtctttatctgttgaagaagttatcgaagataaagggcta
ctgacttatttgggtactcgtgaagatactcaagagacagaggtgactctgcgtgaaatc
tttttaagtaaccagatccgctttaacaagccacaagataagctgtacgcaggtcaaatc
gaccgtatggataactttgtgttgcgctaccgtgctttaagcaaccaataccaacaacat
aagagcccaatgcgcggcttgtgtggtatgcgtgcaggtcttatccctcatcagctttac
attgctcatgaagtcggtcgtcgtcacgctccgcgcgttttgctggctgatgaagttggc
ctaggtaaaaccatagaagcgggcatgatcatccaccaacaggtgttgtctggccgtgct
gaacgtattctgattgtggttcctgaaactctacaacaccagtggttagtagagatgatg
cgccgtttcaacctgcacttctctatctttgatgaagagcgttgcatagaatctttcgca
gaatcagataatccattcgatacacagcaatacgttctgtgttctttggatttcctacgc
aagagccgtaagcgctacgagcaagcacttgaaggtgagtgggatttgttggttgtcgat
gaagcacaccaccttgagtggagccaagacaaaccgagccgcgaataccaagtggttgaa
ggattagctgaaaacacgtctggtgtattgctactgacagcgacccctgaacagcttggt
cgtgagagtcactttgcgcgtctgcgtctgcttgatcctgaccgcttctacgattacgaa
gcattcgttgaagaagaagaccaatacgcaccggttgctgatgcagtaacggcattgttc
tctggtgtgaagcttgaaaacagcgcgaagaaccagattacggaactgctttctgagcaa
gatgttgagcctctgttccgtgtgattgaaggtgatagcagcgaagaagagcaagcgtta
gctcgccaagaactgattgataaccttatggatcgccatggtaccggccgtgttcttttc
agaaatacacgtgctgcaatcaaaggcttccctaagcgtaatgtaaacctactgccgatg
gacattccaacgcagtacacaacctcaatgcgtgtatctggcatgatcggtggcaagatg
gcgccagaagctcgtgcaatgaagatgctgtacccagaagagatcttccaagagtttgaa
ggtgaagattcaagctggtggcagtttgactcacgcgttaactggttgattgaaaagatc
caagacaagcgcagcgagaaaatcttagtgatcgcctctcgtgcaagtacggctcttcaa
ttagagcaagcactgcgtgagcgtgaaggtgtgcgtgcaactgtattccacgaaggcatg
tcgattctagaacgtgataaagctgcggcctactttgctcaagaagagggcggcgctcag
gttcttatctgtagtgaaatcggctctgaaggtcgtaacttccagttcgctaaccaatta
gtgatgtttgatctaccgttcaacccagacttgcttgagcaacgtattggtcgtttggac
cgtattggtcagctacgtgatatcgacattcatgttccttacctaaaaggcacatcacag
gcgattctagcgcgttggttcgatgaaggtctgaatgcattcgcagagacttgtcctact
ggtcgcacagtttacgataagtattctgatgtactgatcgagatgctggcttctggtaac
actgagcaacttgatgaagtgattgaagagtctgccaagctaaatcaaagcctgaaatca
gatctagaaaaaggccgtgatcgcctattagaaatgcactcaaacggcggcgacaaagcg
catgaaattgcagagaagattgcctcgactgacggcgacactaacctagtaacgtttgca
ctaagcctgttcgatacgattggcttgaaccaagacgacaagggtgagaatgctctggtt
gtaacgccgtctgagcacatgatggtgccaagctacccaggcttaccatacgaaggcgca
accatcacgtttgaccgtgaaaccgcgctttctcgtgaagacatgaattttattagctgg
gaacacccaatgattcagggcggtattgatctgctattgagtgaaggtgtgggtgcgtct
gcggtatctctactgaagaacaaagcgctgccagtcggtacgattctacttgagttggtt
taccttgttgatgcacaagcgccaaagcgcagcggtatcagccagttcctacctaagacg
ccgattcgcttgatgatggatggtcgtggtaacgatttatctgctcaggttgaattcgat
agctttaaccgtcaactaagcccggtaaaccgtcatttagcgagcaagctagtgaactcg
gtacaaggtgagattcacaagctaatcgaagcaggtgagacgcatgtactgccgaaggtt
gaagaagttcgtcaacaagctcagaaagatatgcaaactaacttgaacggtgagctagaa
cgcctacaagcgcttaaagcggtgaaccctaacattcgtgatgaagaactggaggttatc
gaagctcaaatcaatgaactgacaggttacatcagcaaggctcaggttcagcttgattcg
ctacgtttgattgtggtttctcacaactag
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