Vibrio atlanticus: VS_0980
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Entry
VS_0980 CDS
T00812
Name
(GenBank) UvrABC system protein B
KO
K03702
excinuclease ABC subunit B
Organism
vsp
Vibrio atlanticus
Pathway
vsp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VS_0980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsp03400
]
VS_0980
DNA repair and recombination proteins [BR:
vsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VS_0980
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VS_0980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
UvrD-helicase
PhageP22-tail
Motif
Other DBs
NCBI-ProteinID:
CAV18011
UniProt:
B7VLU0
LinkDB
All DBs
Position
1:1012930..1014960
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AA seq
676 aa
AA seq
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MSKLFDLVSDYSPSGDQPTAITKLLDGLDSGLAHQTLLGVTGSGKTFTLANVISQSQRPA
ILLAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIE
QMRLSATKALLERKDAIIVASVSAIYGLGDPKSYLKMMLHLSRGEVMDQRDILRRLAELQ
YSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRIEMFDDEVDCISIFDPLTGAVKQRDLP
RFTVYPKTHYVTPREKILEAIENIKDELRDRAQYLKDNNKLLEEQRISQRTQFDIEMMTE
LGFCSGIENYSRYLSGRAEGEAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKE
TLVEFGFRLPSALDNRPMKFEEFESIAPQTIFVSATPGNYEIEKSDGEIADQVVRPTGLL
DPIIEVRPVATQVDDLLSEIRIRSVKEERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI
GRAARNLEGRAILYGDSITKSMRKAIDETDRRREKQQAYNEEQGITPQALKRNIKDIMEL
GDLTKSKQQRQSKQVPLSKVAEPSENYAVLTPQQLDKEISKLEAAMYQHAQNLEFELAAQ
KRDEIEQLRKQFISNS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaactctttgacttggtatcggactacagcccgtccggtgaccagccgacagcg
ataaccaaattactagatggattggattctggtttggcacatcaaactctattaggggta
acgggctctggtaaaacatttacccttgccaacgtcatttcccaatctcaaagacctgcg
atcttgttagcgcccaataagacattggccgcgcaattatatggcgagatgaaatctttc
tttcctaacaatgccgttgagtatttcgtttcatactacgattactaccagccagaagct
tacgttccgacaacagacacattcatcgagaaagatgcgtctgtgaacgcccatatcgaa
caaatgaggctgtcggcaaccaaggccttgctagaacgaaaagacgccatcatcgtcgcg
tctgtatcggctatctatggtctgggtgatcctaaatcttacctgaagatgatgcttcac
ttgagtcgtggtgaggtcatggaccaacgcgatatcttgcgccgcttggctgagctgcaa
tattcaagaaacgacgttgcgttcgagcgtggccagttccgcgtccgtggtgaagtgatt
gatatcttcccggctgaatcagatcaggatgcagtgcgcatcgaaatgttcgatgatgag
gtggattgcatcagtatctttgatccactgacaggtgcggtcaagcaaagagacttaccg
cgctttaccgtgtatccgaaaactcactatgtaacgccaagggagaaaatccttgaggcg
attgagaacatcaaggacgaactgcgcgatcgtgctcaatacctaaaagacaacaacaag
cttttagaagaacagcgtatttctcagagaactcagtttgatatcgagatgatgacagaa
cttggtttctgttctggtatcgaaaactattcacggtatttgagtggccgtgccgaagga
gaagcgccgccaacgttatttgattacttacctgatgatggtctgttgattatcgatgag
tcacacgtgaccgtgccgcaaattggcgccatgtataaaggtgaccgttcgcgtaaggaa
actctagttgagtttggtttccgtctgccttcggcattggataaccgtccaatgaagttt
gaagaatttgagtctatagccccgcaaacgatttttgtgtcggccacgccaggcaattac
gaaatcgagaaatcagatggtgagattgctgatcaagtggtgcgtcctactggtttgtta
gacccaattatcgaagtaaggcctgtcgcgactcaggttgatgacctattgtctgaaatc
agaatacgttcagtgaaagaagagcgtgtacttgtcacgacgctaactaagcgaatggca
gaggacttaactgaatacctgagtgagcatggcgttaaagttcgttacttgcactctgat
atcgataccgttgaacgcgtagaaattatcagagacctacgtttgggcgagtttgacgtg
ttagtgggcattaacttacttcgagaaggtttggatatgccggaagtatcgctggtggcg
attcttgatgctgataaagagggctttttacgctctgagcgttctttgatccagaccatt
ggccgtgcagctcgtaatttggaaggtcgagcaattctatatggtgactcgattactaag
tcgatgagaaaggcgattgatgaaaccgaccgtcgtagagagaaacagcaggcttacaat
gaagagcaaggtatcacgccgcaagcgcttaaacgtaatatcaaagatattatggagttg
ggtgacctgaccaagtcgaaacagcagcgacaatctaagcaagttccactatctaaggtg
gcagaaccttctgaaaactatgcagtgcttacgccacaacagctcgataaagagatcagt
aaactggaagcggcgatgtatcagcatgctcagaatttggaatttgaattggcggcacag
aagcgtgatgaaattgaacaattgagaaagcagtttatttctaatagctaa
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integrated database retrieval system
