Vibrio atlanticus: VS_1253
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Entry
VS_1253 CDS
T00812
Name
(GenBank) putative exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp03030
DNA replication
vsp03430
Mismatch repair
vsp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VS_1253
03430 Mismatch repair
VS_1253
03440 Homologous recombination
VS_1253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsp03032
]
VS_1253
03400 DNA repair and recombination proteins [BR:
vsp03400
]
VS_1253
Enzymes [BR:
vsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VS_1253
DNA replication proteins [BR:
vsp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VS_1253
DNA repair and recombination proteins [BR:
vsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VS_1253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
CAV18390
UniProt:
B7VN42
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All DBs
Position
1:1350100..1350816
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AA seq
238 aa
AA seq
DB search
MKSFLNYFHPLEKIKRTRKQYLNTVKLPEALHALVDQPCPEMTDLAKDSEYIVLDLETTG
LDSEQDLILSMGWVDVVKGRIDLASAKHIYLDNDSQINAETAVINHITPQMLEEGASIHD
AMLTFFEAAKGKIIVAHACVVEEKFISQYLLRCYGLRAIPLLWLDTLCIEKSMEKAISNH
EEVDLTLAGTRERYGLPEYNSHNALADAVSTAELFLAQQKRVVPNDEVTLSFLYRISR
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgtttttaaattactttcatcctcttgagaaaattaagcgcacacgaaagcaa
tatttgaatacggttaagctgccagaggcgttacatgctcttgtggatcaaccttgccca
gagatgacggacttggccaaagatagcgaatatatcgttttagatcttgaaactacaggc
ttagacagcgagcaagaccttattctatctatgggttgggtcgatgtggtcaaggggcga
atagacttagcgtccgccaagcatatttatctggataacgattcgcagatcaatgctgaa
actgcagttatcaaccacatcacaccacaaatgctggaagagggcgcttcaattcatgat
gctatgctgacgtttttcgaagccgcaaaaggtaagatcatcgtcgcgcacgcttgtgtg
gtcgaagagaagttcattagccaataccttcttcgatgctacggtttaagagcgattcct
ctgctttggcttgataccttgtgtattgagaaaagcatggagaaagcgatcagcaatcat
gaagaagtcgatttaaccttggcagggactcgcgaaaggtacgggcttcctgagtacaac
agccacaatgcattagccgatgccgtttcgacagcggaattgtttttggctcagcagaag
cgagtcgtgcctaatgatgaagtgacactttcctttttatatcggatcagccgttag
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