Vibrio atlanticus: VS_2286
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Entry
VS_2286 CDS
T00812
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp03030
DNA replication
vsp03410
Base excision repair
vsp03420
Nucleotide excision repair
vsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VS_2286
03410 Base excision repair
VS_2286
03420 Nucleotide excision repair
VS_2286
03430 Mismatch repair
VS_2286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsp03032
]
VS_2286
03400 DNA repair and recombination proteins [BR:
vsp03400
]
VS_2286
Enzymes [BR:
vsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VS_2286
DNA replication proteins [BR:
vsp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VS_2286
DNA repair and recombination proteins [BR:
vsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VS_2286
NER (nucleotide excision repair)
GGR (global genome repair) factors
VS_2286
MMR (mismatch excision repair)
DNA ligase
VS_2286
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VS_2286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
RNA_ligase
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CAV19449
UniProt:
B7VIK3
LinkDB
All DBs
Position
1:complement(2455871..2457883)
Genome browser
AA seq
670 aa
AA seq
DB search
MKESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEDENPELVTVDSPS
QRVGGQPLDGFTQVTHEIPMLSLDNAFSDDDLDAFNKRMSDRAPTANLETFCCEPKLDGL
AVSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKA
GFDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAELSNSH
YQRFLQLKAWGLPMCPETKQLSSLEDVKAYYQDIMTRRDTLAYEIDGVVIKVDDIAAQET
LGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLH
NADEIARLGVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVFPDACPVCNSAVERVE
GEAVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVIEQLVDREMVETPADLFKLSA
GVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYSLGIREVGEATAMNLAQHFKTLELVQ
AATHEQLVEVSDIGDIVASHLTSFFSQEKNRAVVDQLIELGVNWPAIEAVADDQELPLEG
KVVVLTGSLSKLGRSEAKAALQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIR
TEEDLIALIS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatcgattcaagttaccttagagcagttaagagaaactctgcactatcatgcc
gttcgttattacgtagaagatagccctgagatccctgatgtcgagtacgatcgattgatg
caacaactgctaaagatcgaagatgagaacccagaacttgtgacggtagattcgccgagt
cagcgtgtcggcggtcagcctctagacggcttcactcaagtgacacatgagatcccgatg
ctttctttagataatgctttctctgatgacgatttagatgcgttcaataagcgcatgtct
gatagagcgccaacggcgaacttagagactttttgttgtgagcctaaacttgatggttta
gctgtgagcctactctatgtaaacggcaccttagtacaggcagcgacgcgtggtgatggt
gcgactggcgaaaatattaccgaaaacgtgcgtaccatcagctcgattccgcttaagtta
caaggtgaaggctggccagaacgtattgaagtccgtggcgaagtgtttatgccaaaagcg
ggcttcgacaaattgaatgagatggcattgaagaagggtgagaaggtctttgtgaatcca
cgtaatgccgccgcaggtagcttacgtcagcttgattctcgtattacagcaaaacgcccc
ttggctttctacgcatacagtgtcggtgttgtacaaggcgctgagctttcaaatagccat
tatcaacgttttctgcagctgaaagcttggggcttacctatgtgcccagagacaaagcag
ctaagttctcttgaggatgtaaaagcctattaccaagatatcatgactcgtcgtgacacc
ttggcttatgaaattgatggggtggtgattaaggttgatgacattgccgcacaagaaact
ctaggttttgttgcacgtgcacctcgctgggctattgcttataagttcccagctcaagaa
gaaattactctgctcaatgatgttgagtttcaggttggtcgtacaggcgctattacgccg
gttgctaagcttgaacctatttttgttggcggcgtgacggtgagtaatgcaaccctgcac
aacgctgatgagatcgctcgtttaggtgtgaaggtcggagatagcgttattatccgccgc
gctggtgacgtcattccacaaattgtagctgttgtacaagatcgtcgtcctgagacggct
aaagacattgtgttcccggacgcctgccctgtatgtaattctgcagtggagcgcgtagag
ggcgaagctgtagcgcgttgtactggcggtttagtgtgtcaggcgcagcgtaaagaggca
cttaagcactttgtgtctagaaaggcgctggatgtcgatggccttggcgtaaaggtgata
gaacagcttgtggatcgcgaaatggtcgaaacgccagcggacctgtttaagttgagcgcg
ggcgtgattacggttcttgatcgtatgggacctaaatcggcacagaatgtagtgagtgcg
cttaacaaagcgaaagacacgacattggcacgcttcctttattctttaggaattcgagaa
gtcggtgaagcgacggctatgaacttagctcagcactttaaaacgctagagttggttcaa
gctgcaactcatgagcagttggttgaagtgtcagatattggtgacatcgtagcaagtcac
ctcacgagcttcttctcacaagagaaaaacagagcagtagtcgaccaacttatcgagctt
ggagttaactggcctgcaattgaagctgttgcggatgatcaagagctaccgttagaaggc
aaagtagttgtgttgactggctcactttctaaattaggtcgcagcgaagcgaaagctgct
ttgcaagctttaggtgcaaaagtaaccggtagcgtgtctaagaaaacggatatcttattt
gctggtgaagccgctggttctaaactgactaaagcacaagatttaggtatcgaaataaga
acagaagaagatctaatagcccttatttcgtaa
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