Vibrio spartinae: Vspart_01311
Help
Entry
Vspart_01311 CDS
T07037
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vsr
Vibrio spartinae
Pathway
vsr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Vspart_01311 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsr03400
]
Vspart_01311 (mfd)
Enzymes [BR:
vsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Vspart_01311 (mfd)
DNA repair and recombination proteins [BR:
vsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Vspart_01311 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
Glyco_tran_WecG
ProQ
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QMV14063
UniProt:
A0A7D7X082
LinkDB
All DBs
Position
1:complement(1435362..1438826)
Genome browser
AA seq
1154 aa
AA seq
DB search
MTSLNPILSLPASQGPGDKKQIGNLTGASLALVAAELSHRHQRHTLLVTTDPQMALKLQQ
EIEQFYAADIMVFPDWETLPYDSFSPHQDIISDRISRLYHLPKQSGGITIIPVTTLLQRQ
SPRDFLLQHTLIVKQRDRFSLVKLREQLENAGYRHVDQVFGPGEYASRGAILDLFPMGSD
LPYRFDFFDDEIDTIRTFDPENQRSIEEIQEVRLLPAHEFPTTATAIEAFRSRFRQHFEA
SREPESVYMQVSKGIWPAGIEYWQPLFFDHTETLFDYLPADTQLIVVGDIEPSIDRFLHD
VDERYEQRRVDPLRPLLEPAKLWLQKDELFAMLKPFTQFQVHSEAVTEKAGRFNLQVSPL
PEIKAQHQHKEPLAALRQFVESHTGQIIFSVESEGRREALLELLQRIKLRPSTLPSFQDA
CLSDEKYALIIGTAEHGFILHEQQVALICESDLLGDRVVQRRKKDKRVTNSDAVIRNLAE
LKPGQPVVHIDHGIGRYIGLQTLEVGGITTEYVTLEYQGEAKLYVPVSALNLISRYSGGA
DENAPIHKLGGESWGKARRKAAEKARDVAAELLDVYAKRELKPGHVFALDREQYATFKAS
FPFEETDDQSMAINAVLSDMCQNKAMDRLICGDVGFGKTEVAMRAAFVCTDNSKQVAVLV
PTTLLAQQHFENFRDRFANHPIRVEVLSRFKTAKEQKQILQDVADGKIDILVGTHKLLSS
ELKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPARRLAVKTFIRQSDQTTIREAVLREVMRGGQVYYLHNQVETIDKVAADLEKLIPEA
RITVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDIPTANTIIMHRADSLGLAQL
HQLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLEALASLEDLGAGFTLATHDLEIRGAG
ELLGEEQSGQIQSVGFTLYMEMLEQAVDALKSGKEPSLDDLLKTQTEVELRLPALLPDDY
IPDINTRLSMYKQIASVSNPDELNELRVELIDRFGKLPDAALNLLEISQLKLEAAALNIK
KIEAHSKGGYIEFDLNASINPAYLVQLLQSQPKQYGMDGPTKFKFTLPLEERNQRLVFIR
DMLNEFQQNILPAS
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcttaaatcccattctatcgcttccggcatctcaaggcccgggagataaaaaa
cagatcggtaacctgacgggtgccagtctcgcacttgtggcagcagagctgtcccatcga
catcaacgtcatacgctgctcgtcactactgacccgcagatggcgttgaaattacagcag
gaaatcgaacagttctacgctgccgacatcatggtatttccggactgggaaacactgcct
tatgacagtttttccccgcatcaggacattatctctgatcgaatctcacgactctatcat
ctgcccaaacaatcaggtgggattacgattatcccggtgacgacattactgcaaagacag
tcaccccgtgattttttgctgcaacatacgctgatcgtcaagcaaagagatcgcttttct
ttagtaaaactcagagaacagcttgaaaatgccggctatcgtcatgtcgatcaagtgttt
ggtccgggtgaatatgccagccggggggccattctcgacctgttcccgatgggcagtgac
ctcccctatcgttttgacttttttgatgatgaaattgataccattcggacctttgatccg
gaaaatcaacgttcgatagaagaaattcaggaagttcggctcctgccggctcacgagttt
ccgacgacggccactgcgatcgaagctttccggagccggtttcgtcagcattttgaagcc
tccagagagcctgaatccgtctatatgcaagtttcaaagggcatatggccggcaggaatt
gaatactggcaacccctgtttttcgatcacaccgaaacgctcttcgactatttaccggca
gacactcagctgattgtcgtcggtgacattgaaccatcgattgatcgttttctgcatgat
gtcgatgaacgttatgaacaaagacgcgtcgatccattacggccactgcttgaaccggcc
aaactctggctgcaaaaagatgaactttttgccatgctgaagccttttacgcaatttcag
gttcatagtgaagctgtcactgaaaaagcaggtcgattcaatcttcaagtctcacccttg
ccggaaatcaaagctcagcatcagcataaagagccgctggcggcactccgccagtttgtt
gaatcccatacgggacaaattatattctccgtcgaatcggaaggtcgtcgcgaagcgctg
ctcgaactgctacaacgaatcaaattacgcccttcgacactgccgtcttttcaggatgct
tgtctgagtgatgaaaaatatgcgttgattatcggaacggctgagcatgggtttattctg
catgaacaacaggttgccttgatttgcgaaagtgacctccttggcgatcgcgttgttcag
cgtcgtaaaaaggacaaacgggtcaccaatagtgatgccgtgatccgcaatcttgctgaa
ctcaaacccggtcagcccgtggttcatattgatcatgggatcggacgctatatcgggtta
cagacattagaagtgggtggcattacaacagaatatgtcacgctggaatatcagggagaa
gccaagctttatgtcccggtttcagcgctgaatctgattagccgctattccggtggtgcc
gatgaaaatgccccgattcataaactgggaggggaaagctggggcaaagctcgccgcaaa
gcagcggagaaagcccgggacgtggcggccgagttgctggatgtctacgccaaacgagaa
ctaaaaccgggtcatgtcttcgctctggatcgcgaacagtacgcgacgttcaaagccagc
ttcccgtttgaagaaacggatgatcagtcaatggcgatcaacgcggttctttcggatatg
tgtcaaaataaagccatggatcgcttaatctgcggtgatgtcggtttcggtaagaccgaa
gttgccatgcgtgcagcctttgtctgtacggataacagcaaacaggtcgcagttttggtt
ccgacaacattgcttgcgcagcaacattttgaaaacttcagagaccgctttgccaatcat
cccattcgcgttgaggttctatctcgctttaaaacagccaaagaacagaaacagatcctg
caagatgtggcggatggcaaaattgatatcttagtcggcacgcataagctactctccagc
gagttgaaatttaaagatctcggattgttgattgttgatgaagaacaccgcttcggggtc
cgtcagaaagagaaagtcaaagcgatgcgggcagatgttgatatcctcacgctcacggca
acaccgattcccagaacgctgaatatggcgatgagcgggatgcgggatttatccatcatt
gcgaccccacccgcacgacgcttagccgttaaaacatttatcaggcaaagtgatcagacg
actatccgagaagcagtattgcgggaggtcatgcgtggcgggcaggtgtactatctgcat
aatcaggttgaaacgattgataaagtcgcggccgatctggagaagctgattcccgaagca
cggattaccgtggcacatggtcagatgcgtgaacgtgaactggaacgcattatgaacgat
ttttatcatcagcgttttaatctgctggtttgcaccaccatcattgaaacaggtatcgat
ataccgaccgccaatacgatcattatgcaccgggccgactctttgggcctcgcgcaacta
catcaattacggggacgagtcgggcgttcacatcaccaagcctacgcttatttgctgaca
ccacatccgaaagccatgaccaaagatgccatcaaacgtttagaggctttggcttccctt
gaagatctcggggccggatttacgctcgcaacccatgatcttgaaatccggggagcgggt
gagctactcggtgaagaacagagtggacagatccagtctgtcggttttacgctttatatg
gaaatgcttgagcaggctgtagatgcactgaaatccggcaaagagccttccctagacgac
ttgctgaaaacacagacggaagtggaactccggttaccggccctgcttcccgatgactat
attccagacatcaatacccgcctgtcgatgtataaacagatcgcgagtgtgtcaaatcct
gatgaactgaatgaattgcgagtcgaattgattgaccgctttggcaaactgccggatgcc
gcgctcaacctgttagaaatcagtcaactgaaattggaagccgcagcactgaacattaag
aaaattgaagcgcacagtaaaggcggttacattgaatttgatcttaatgctagtattaac
cccgcgtatttagtgcaactcttacaatctcaaccgaaacaatacggcatggatggccca
acgaagtttaagtttaccctgccgctggaagaacgaaaccagcgactggtttttatccga
gatatgctgaatgaatttcagcagaatatactaccggcttcctga
DBGET
integrated database retrieval system
