Vitreoscilla stercoraria: LVJ81_01825
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Entry
LVJ81_01825 CDS
T08153
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
vst
Vitreoscilla stercoraria
Pathway
vst03030
DNA replication
vst03430
Mismatch repair
vst03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LVJ81_01825 (holB)
03430 Mismatch repair
LVJ81_01825 (holB)
03440 Homologous recombination
LVJ81_01825 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vst03032
]
LVJ81_01825 (holB)
03400 DNA repair and recombination proteins [BR:
vst03400
]
LVJ81_01825 (holB)
Enzymes [BR:
vst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LVJ81_01825 (holB)
DNA replication proteins [BR:
vst03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LVJ81_01825 (holB)
DNA repair and recombination proteins [BR:
vst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LVJ81_01825 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
YedD
NACHT
nSTAND3
DEAD
AAA_22
DNApol3-delta_C
Sigma54_activat
BLTP1_mid
AAA_5
DNA_pol3_delta
TsaE
RNA_helicase
Motif
Other DBs
NCBI-ProteinID:
UOO92811
LinkDB
All DBs
Position
complement(391971..392942)
Genome browser
AA seq
323 aa
AA seq
DB search
MIYPWQQASWQHLSARWQTLPHAVLLSGQQGIGKQVFAQHLAQTLLCEQPLAQQACQQCS
GCHLFAQNSHPDYLFVTPEQDASSARKLAQIKVDTVREILAFAQLSSHQGGKRVVVISPA
ESLNIQAANALLKVLEEPPENVVFILISHHRDRLLPTVLSRLQIIAMPKPTPQEVQTYWQ
QQGLQADMAQLAFHAGSPLQQEDEAVSALREQWLHVLAKPRLLALLDFAHSFDQQKRPLA
EALDWLYKWLVDAALAQQNVNALYYPQHQQALSQLPAYPTYLWQQLVEKLHDLMPFGHHT
LNVKLQLEDICIDYLNLMTTKES
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgatttacccatggcaacaagcctcttggcaacacttaagcgcacgctggcaaaccttg
ccacacgcggtgcttttaagtggacaacaaggcataggcaagcaagtatttgcccaacat
ttggcacaaactttattgtgtgaacaaccgctggcacaacaagcttgccaacaatgtagt
ggctgccatttgtttgcccaaaacagccaccctgattatttgttcgtcacacccgaacaa
gatgcctcttctgcccgcaaactggcacagattaaagtcgatactgtgcgtgaaattttg
gcattcgctcaattgagcagccaccaaggtggcaaacgggtggtggtgatttcacctgca
gagagtttgaatatacaggccgccaatgctttattgaaagtgttggaagagccgcctgaa
aacgttgtgttcattttaatcagccaccaccgagaccgcttgttgccaactgttttaagc
cgcttgcaaatcatcgctatgcccaagccgacaccacaagaagtgcaaacctattggcaa
caacaaggtttacaggccgatatggcgcaattggcttttcatgcaggctcgcccttacaa
caagaagacgaagcggtgtctgccttgcgtgagcaatggctgcatgttttagccaagcct
agactattggctttgttagattttgcccatagttttgaccaacaaaaacgccctttggcc
gaagccttagattggttgtacaaatggttggttgatgcagcattggctcaacaaaacgtg
aatgctttgtattacccacaacaccaacaagcattgagccaattacctgcttatccaact
tatttgtggcaacaattggtcgaaaaattgcatgacttgatgccatttggacaccacaca
ttgaatgttaagctacaattagaagacatctgtatcgactatttgaatttgatgaccaca
aaggaatcttaa
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