Varunaivibrio sulfuroxidans: P3M64_02055
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Entry
P3M64_02055 CDS
T08892
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vsu
Varunaivibrio sulfuroxidans
Pathway
vsu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P3M64_02055 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsu03400
]
P3M64_02055 (mfd)
Enzymes [BR:
vsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P3M64_02055 (mfd)
DNA repair and recombination proteins [BR:
vsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P3M64_02055 (mfd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
UB2H
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WES31185
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All DBs
Position
461720..465145
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AA seq
1141 aa
AA seq
DB search
MLLSALFGLKGKDSRDVIFVARDDVHLARMGQTLRFFAPDSDIIEFPAWDCLPYDRVSPS
GDIVASRIATLTQLARPGDGRARAILTTISSCLQRVPPRAVFCGALLRLNVGGSLSSDML
VDFLENNGYGRSATVMEPGEYAVRGGIVDVFPPGASEPLRLDFFGDTLDSLRHFDPTTQM
TSAHTATFTLAPVSEIVLNEDTKKHFRTAYRELFGAVPPDDTLYEAVSAGRRHMGMEHWI
ALFYDKLETLFDYLPDARIVLDHQIDTAVEGRHELIREYYAARLAMRESKSKTVGGRYNP
VPPEKLYLSAKDWRAALRVFPVVRLSPFAVPEGPNTVDADGRGGRDFSDARVQGALNVFD
ALAAHIRAMIGEERKVLISAFSEGTAQRIKTALTEHGFESLVAIDDWSARARVAKHAAAL
CVVGIERGFVAPGLAVISEQDILGDRMTRERKNRKKVSAENIIADASSLGEGDYVVHGEH
GIGRFEGLHTVQVGGADHDCLKLVYAGDDRLFLPVENIDVLSRYGSHEAGAHLDRLGGAG
WQARKAHMKQRLKDMAENLIKIAAGRELKNSAKIVPDPAAFNEFCARFPYVETDDQSRAI
EDVLGDLAGGRPTDRLVCGDVGFGKTEVALRAAFATVMTGRQVAVVVPTTLLCRQHYHNF
KARFADFPVNVAQLSRLVPPKTSKRVKTEMKDGRVDIVIGTHALLAKDVGFKELGLLIVD
EEQHFGVAHKEKLKGLKSDVHVLTLSATPIPRTLQLALSGVREMSLIATPPVDRLAVRTF
ILPFDPVIVREAIMRERFRGGQIFYVCPRIQDQPELTEALRDLVPEARIAVVNGQMPIKQ
LEEMVSDFQDGKFDVLLSTNIIESGLDMTSVNTIIIHRADRFGLAQLYQLRGRVGRSKTR
AYAYLTLPPGKTISTAAQKRLEVMQTLDSLGAGFMLASHDLDIRGAGNLLGGEQSGHIRE
VGIELYQQMLEEAVAEARGAQGGATQSAGDGDWSPQVSCGVTVMIPETYVGDLSVRMDLY
RRVARLHDDEQSEAFAAEMIDRFGPLPEAVENLLKTVEIKRLCRKARVEKLESGPKGAVV
SFRDNSFPNPEALVQFIVQQVGTAKLRPDHKLVFKRDWETPADRLKGVRHLARELAALVT
P
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
ttgctcctttccgcgctcttcggactgaagggaaaagactcccgggatgtgatcttcgtc
gccagggacgatgttcatctggcgcggatggggcaaacgttgcgttttttcgccccggat
tcggatattatagaattccccgcgtgggattgtctgccctatgacagggtttcccccagc
ggcgatattgtggcttcgcggatcgccacgctgacgcagttagcgcgccccggcgatggg
cgcgcacgcgccattctcaccacgatatcgtcctgcttgcaacgggtgccgccccgtgcg
gttttttgcggcgcgctcttgagactgaacgtcggcggttccttatcctccgatatgttg
gtcgattttctcgaaaataacggctatggacgttcggcgacggtgatggagccgggcgag
tatgccgtgcgcgggggaatcgtggacgttttccccccgggagcctcggagcccctgcgt
ctcgattttttcggcgacaccctggatagtttgcgtcatttcgatccgaccacccagatg
acaagcgcgcacacggcgaccttcacgctggctccggtcagtgagatcgtcttgaacgag
gatacaaaaaaacatttccgcaccgcgtatcgggagctgtttggcgccgttcccccggat
gacacactctacgaggcggttagcgccggacgtcgccatatgggtatggaacattggatc
gcgctgttttacgacaagcttgagacattgttcgactatcttcccgacgcccgcatcgtt
ctcgatcatcagatcgataccgcagtcgaaggccgccacgaactgatcagggaatattac
gcggcgcgcctggccatgcgtgaatccaaaagcaaaacggttggtggtcgctacaacccg
gttcccccggaaaaactgtaccttagcgccaaggactggcgcgccgccttgagggttttc
cccgtcgtgcgtctttctccttttgccgttcccgaaggccccaataccgtcgatgccgac
gggcgcggggggcgcgatttttcggacgccagggtacagggcgccctcaacgtgttcgat
gcgctggccgcgcatatccgcgccatgatcggtgaggaacgtaaggttctcatcagcgcc
ttttccgagggtacggcgcagcgcataaaaacggcgttgacggagcatggtttcgaaagt
ttagtcgcgatcgacgattggtcggcgcgcgcccgggtggcgaagcatgctgcggcgtta
tgcgtggttgggatcgaacgagggttcgtcgccccagggttggcggtgatctccgagcag
gacatcctaggcgatcgcatgacccgcgaacgcaagaaccgcaaaaaggtcagcgcggag
aacattatcgccgacgcctctagtctcggcgagggggattatgtggtccacggtgagcat
ggcattgggcgtttcgagggcttgcacaccgttcaggtcgggggggccgatcatgattgc
ttaaagctggtctatgccggggacgataggctttttctcccggtcgaaaatatcgatgtt
ttatcgcgctacggttcgcatgaggcgggcgcgcatctcgatcgtctaggcggggcggga
tggcaggcgcgcaaggcccatatgaagcagcggctgaaagacatggccgaaaacttgatt
aaaatcgccgccggccgcgagttgaaaaacagcgcgaaaatcgttcccgatccggcggcg
ttcaacgaattttgcgcccgattcccctatgtcgaaaccgacgatcaatcccgcgccatc
gaggatgtacttggggatctggccggtggacgtccgactgaccggctggtttgcggcgat
gtcggattcggtaaaacggaggtcgcgttgcgcgcggctttcgccaccgtgatgacgggt
cgtcaggtcgccgtcgtggtgccgacaacgctgctgtgccgtcagcattatcacaatttc
aaggcgcgtttcgccgattttcccgttaacgtggcgcagctctcgcgtctggtcccccct
aaaacctcaaagcgggtcaagaccgagatgaaggacggccgcgtcgatattgtcatcggc
acccatgcccttctggccaaagacgtcggtttcaaggaactgggtttgttgatcgtcgat
gaagaacagcatttcggcgttgcgcataaggaaaagttgaagggattgaagtcggacgtt
catgttttgacgctgtcggcgacaccgatcccgcgaactttacaattggccttatcgggt
gtgcgtgaaatgagtctcatcgcgaccccgccggtggaccgccttgccgtgcgcacgttc
attttgccgttcgacccggtgatcgtacgcgaagccattatgcgtgagcgttttcgtggg
ggacaaattttttatgtttgcccgcgcatccaagatcaacccgaattgaccgaagccttg
cgcgatttggtccccgaggcgcgcatcgccgtggtcaacgggcaaatgccgatcaagcaa
ctggaagaaatggtcagcgattttcaggacggaaaattcgatgttctgctatcgacgaac
atcattgagagcggcttggacatgacttcggtcaacaccattatcatccaccgcgccgac
cgtttcggactggctcagttgtaccaattgcgcggtcgtgtcggacggtcgaaaacgcgc
gcctacgcttaccttacgctgcctccgggcaagaccatatcgacggcggcgcaaaaacgc
ctggaagtgatgcagaccctggacagtttgggggcgggattcatgctggcgagccacgat
ttggatatccgcggcgcggggaatcttctcggcggcgaacaatcgggacacatccgcgaa
gtcggcatcgagctttatcagcaaatgctggaagaagccgtcgccgaggcgcggggggcg
caggggggcgcaacacagagcgccggcgatggcgattggagccctcaagtatcgtgcggc
gtgacggtcatgataccggaaacctacgtcggcgacttgagcgtgcgcatggatttgtat
cgccgcgtcgcccgtctgcatgacgacgaacaatccgaagccttcgccgccgaaatgatc
gaccgtttcggtcccttgcccgaagccgtcgagaatcttttaaagacggttgaaattaag
cgattgtgccgaaaggcgcgggtcgaaaaattagaaagcggccccaagggggcggtcgtc
tctttccgcgacaacagctttccaaaccccgaggcgctggttcaatttatcgttcagcag
gtcggtacggcaaaattaaggcccgatcataaattggttttcaagcgcgactgggaaacc
cccgccgatcgcctgaagggcgtgcgccatctcgcccgcgagttggccgccctggtcacg
ccgtga
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