Varunaivibrio sulfuroxidans: P3M64_03300
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Entry
P3M64_03300 CDS
T08892
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
vsu
Varunaivibrio sulfuroxidans
Pathway
vsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P3M64_03300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsu03019
]
P3M64_03300
Messenger RNA biogenesis [BR:
vsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P3M64_03300
BRITE hierarchy
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GFIT
Motif
Pfam:
RMMBL
Lactamase_B_2
RNase_J_C
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
WES31413
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Position
complement(723504..725180)
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AA seq
558 aa
AA seq
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MAQEELLFLPLGGAGEIGMNLNLYGFGAPGDVTWVMVDLGITFGDAMLPGVDVMMPDPHY
IVEHKDRLAGLVLTHAHEDHIGAVAHLWEKIGRPPIYATPFTAQIVGHKLAEAGLVKEAK
ITVIALGGKFSVGPFDMELITLTHSIPEPNAIAIRTKLGTVLHTGDWKFDPDPVLGAASD
EAGLEKLGDEGVLAMVCDSTNVFTPGTSGSEGDLLESLTKIIAAADQRVVVTCFSSNVAR
IETVARAAKACGRDVVLSGRSLQRMVAAARDNGYLQDTAKFLEEDDAGFLPRDKTLIVCT
GSQGEPRAALARMAADDHPRLTLNEGDTVIFSSRIIPGNEVVIGRMQNRLVRGGIHVVTE
KDAFVHVSGHPARDELVRMYQRVRPKIAVPVHGELRHISEHARLAKTCQVTQAVVNENGG
MIRLAPGDAAIIEEVPSGRLTLEGNRLVPLDSELVRGRTRSLFNGEAVVSVVVEDDGILA
ADPQITTTGLLDPSETDLLDGAVDIAANVVDTLSKKARSQDDQISEAVRIAVRRYFRNSL
NKNAVVKVQMIRLGPIED
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggcacaagaagaactgttgtttctgcccttgggcggcgcaggcgaaatcggcatgaac
ctcaacctctatggctttggcgcaccgggggatgtgacatgggtaatggtcgatttgggc
attactttcggcgacgccatgctgcccggcgtcgatgtgatgatgcccgacccgcactat
atcgtcgaacataaggaccgcctagcgggactggtgctcacccacgcccacgaggatcat
atcggcgcggtcgcccacttgtgggaaaagatcggacgcccgccgatttacgcgaccccg
ttcacggcgcagatcgtcgggcacaaactggccgaggcgggactcgtcaaagaggccaag
atcacggtcattgcgttgggcgggaaattttccgtcggtccgttcgatatggaattgatc
acgctgacccattcgatccccgaacccaacgcgatcgccatccgcaccaagctgggcacg
gtcctgcataccggggactggaagttcgatcccgaccccgtcctgggcgcggcttcggat
gaagcggggctggaaaaactgggtgacgagggcgtcctcgcgatggtctgcgattcgacc
aacgttttcacgccgggaacatcgggttcagaaggcgacctgctcgaaagcctgaccaaa
attattgccgcggccgatcaacgtgtcgtggtgacgtgtttttcatccaatgtcgcccgg
atcgaaaccgtcgctcgtgcggccaaggcttgtgggcgcgacgtggttttgtccggccgt
tctcttcaacggatggtggcggcggcgcgcgataacggctaccttcaagacaccgcgaaa
ttcctcgaagaagacgacgccggtttcctgccccgtgacaagaccctgatcgtgtgcacc
ggatcgcagggcgagccgcgcgccgctctggcgcgcatggccgccgacgatcacccgcgt
ttaacattgaacgagggggatacggttattttttcatcgcgcatcattcccggaaacgag
gtggtgatcgggcgaatgcaaaatcggctggtgcgtggcggcattcatgtggtgaccgaa
aaagacgccttcgtccatgtttcgggccatcctgcgcgcgacgaactggtgcgcatgtac
caacgtgtccgtcctaagattgcggttcccgtacacggtgagctgcgtcatatttccgaa
cacgcccgtctcgccaaaacctgtcaggtgacgcaggcggtggttaatgaaaacggcggt
atgatccgtctcgccccgggcgacgcggcgatcatcgaggaggtgcccagcgggcggttg
accctggagggcaaccgtttggttcctctcgatagtgagctggtgcgcggacgcacccgt
tctttgtttaatggcgaggcggtggtcagcgtggtcgtcgaggacgatggcatcttggct
gcggacccgcaaatcacgacgacgggccttctcgatccgtccgagacggaccttctggac
ggcgctgtcgatatcgccgcgaacgtcgtcgatacgttgtcgaaaaaagcccgaagccag
gacgaccaaatcagcgaggcggtgcgcatcgcagtgcggcgctattttcgaaatagcttg
aataagaacgccgtggtcaaggtgcagatgattcgccttgggccgatcgaggattaa
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