KEGG   Varunaivibrio sulfuroxidans: P3M64_03300
Entry
P3M64_03300       CDS       T08892                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
vsu  Varunaivibrio sulfuroxidans
Pathway
vsu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vsu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    P3M64_03300
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vsu03019]
    P3M64_03300
Messenger RNA biogenesis [BR:vsu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     P3M64_03300
SSDB
Motif
Pfam: RMMBL Lactamase_B_2 RNase_J_C Lactamase_B
Other DBs
NCBI-ProteinID: WES31413
LinkDB
Position
complement(723504..725180)
AA seq 558 aa
MAQEELLFLPLGGAGEIGMNLNLYGFGAPGDVTWVMVDLGITFGDAMLPGVDVMMPDPHY
IVEHKDRLAGLVLTHAHEDHIGAVAHLWEKIGRPPIYATPFTAQIVGHKLAEAGLVKEAK
ITVIALGGKFSVGPFDMELITLTHSIPEPNAIAIRTKLGTVLHTGDWKFDPDPVLGAASD
EAGLEKLGDEGVLAMVCDSTNVFTPGTSGSEGDLLESLTKIIAAADQRVVVTCFSSNVAR
IETVARAAKACGRDVVLSGRSLQRMVAAARDNGYLQDTAKFLEEDDAGFLPRDKTLIVCT
GSQGEPRAALARMAADDHPRLTLNEGDTVIFSSRIIPGNEVVIGRMQNRLVRGGIHVVTE
KDAFVHVSGHPARDELVRMYQRVRPKIAVPVHGELRHISEHARLAKTCQVTQAVVNENGG
MIRLAPGDAAIIEEVPSGRLTLEGNRLVPLDSELVRGRTRSLFNGEAVVSVVVEDDGILA
ADPQITTTGLLDPSETDLLDGAVDIAANVVDTLSKKARSQDDQISEAVRIAVRRYFRNSL
NKNAVVKVQMIRLGPIED
NT seq 1677 nt   +upstreamnt  +downstreamnt
atggcacaagaagaactgttgtttctgcccttgggcggcgcaggcgaaatcggcatgaac
ctcaacctctatggctttggcgcaccgggggatgtgacatgggtaatggtcgatttgggc
attactttcggcgacgccatgctgcccggcgtcgatgtgatgatgcccgacccgcactat
atcgtcgaacataaggaccgcctagcgggactggtgctcacccacgcccacgaggatcat
atcggcgcggtcgcccacttgtgggaaaagatcggacgcccgccgatttacgcgaccccg
ttcacggcgcagatcgtcgggcacaaactggccgaggcgggactcgtcaaagaggccaag
atcacggtcattgcgttgggcgggaaattttccgtcggtccgttcgatatggaattgatc
acgctgacccattcgatccccgaacccaacgcgatcgccatccgcaccaagctgggcacg
gtcctgcataccggggactggaagttcgatcccgaccccgtcctgggcgcggcttcggat
gaagcggggctggaaaaactgggtgacgagggcgtcctcgcgatggtctgcgattcgacc
aacgttttcacgccgggaacatcgggttcagaaggcgacctgctcgaaagcctgaccaaa
attattgccgcggccgatcaacgtgtcgtggtgacgtgtttttcatccaatgtcgcccgg
atcgaaaccgtcgctcgtgcggccaaggcttgtgggcgcgacgtggttttgtccggccgt
tctcttcaacggatggtggcggcggcgcgcgataacggctaccttcaagacaccgcgaaa
ttcctcgaagaagacgacgccggtttcctgccccgtgacaagaccctgatcgtgtgcacc
ggatcgcagggcgagccgcgcgccgctctggcgcgcatggccgccgacgatcacccgcgt
ttaacattgaacgagggggatacggttattttttcatcgcgcatcattcccggaaacgag
gtggtgatcgggcgaatgcaaaatcggctggtgcgtggcggcattcatgtggtgaccgaa
aaagacgccttcgtccatgtttcgggccatcctgcgcgcgacgaactggtgcgcatgtac
caacgtgtccgtcctaagattgcggttcccgtacacggtgagctgcgtcatatttccgaa
cacgcccgtctcgccaaaacctgtcaggtgacgcaggcggtggttaatgaaaacggcggt
atgatccgtctcgccccgggcgacgcggcgatcatcgaggaggtgcccagcgggcggttg
accctggagggcaaccgtttggttcctctcgatagtgagctggtgcgcggacgcacccgt
tctttgtttaatggcgaggcggtggtcagcgtggtcgtcgaggacgatggcatcttggct
gcggacccgcaaatcacgacgacgggccttctcgatccgtccgagacggaccttctggac
ggcgctgtcgatatcgccgcgaacgtcgtcgatacgttgtcgaaaaaagcccgaagccag
gacgaccaaatcagcgaggcggtgcgcatcgcagtgcggcgctattttcgaaatagcttg
aataagaacgccgtggtcaaggtgcagatgattcgccttgggccgatcgaggattaa

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