Vibrio syngnathi: K08M4_09770
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Entry
K08M4_09770 CDS
T09193
Name
(GenBank) transcription-repair coupling factor
KO
K03702
excinuclease ABC subunit B
Organism
vsy
Vibrio syngnathi
Pathway
vsy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K08M4_09770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsy03400
]
K08M4_09770
DNA repair and recombination proteins [BR:
vsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K08M4_09770
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K08M4_09770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
PhageP22-tail
Motif
Other DBs
NCBI-ProteinID:
ARP37736
UniProt:
A0AA34TMQ5
LinkDB
All DBs
Position
1:1008198..1010228
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AA seq
676 aa
AA seq
DB search
MSKLFDLVSDYSPSGDQPTAITKLLDGLDSGLAHQTLLGVTGSGKTFTLANVISQSQRPA
ILLAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIE
QMRLSATKALLERKDAIIVASVSAIYGLGDPKSYLKMMLHLSRGEVMDQRDILRRLAELQ
YSRNDVAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEVDCISIFDPLTGAVKQRDLP
RFTVYPKTHYVTPREKILEAIEKIKDELRDRAQYLKDNNKLLEEQRISQRTQFDIEMMTE
LGFCSGIENYSRYLSGRNEGEAPPTLFDYLPNDGLLIIDESHVTVPQIGAMYKGDRSRKE
TLVEFGFRLPSALDNRPMKFEEFESIAPQTIFVSATPGNYEIEKSDGEIADQVVRPTGLL
DPIIEVRPVATQVDDLLSEIRIRSAKEERVLVTTLTKRMAEDLTEYLSEHGVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI
GRAARNLEGRAILYGDSITKSMRKAIDETDRRREKQQAYNEEQGITPQALKRNIKDIMEL
GDLTKSKQQRQSKQVPLSKVAEPSESYAVLTPQQLDKEISKLEAAMYQHAQNLEFELAAQ
KRDEIEQLRKQFITNS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaactctttgacttggtatcggactacagtccgtccggtgaccagccgacggcg
ataaccaaattactagatggactagattctggtttggcacatcaaactctattaggggta
acgggctctggtaaaacatttacccttgccaacgtcatttctcaatctcaaagacctgca
atattgttagcgcctaataagacactggcagctcaactttatggcgagatgaagtcattt
tttccaaataatgccgttgagtacttcgtttcttactacgattactaccagcctgaagcg
tatgtaccgaccacagacacattcattgagaaagatgcgtcggtgaatgctcatatcgaa
cagatgagactttcggcgaccaaggccttattggagcgaaaagacgccatcattgtggct
tctgtatcggctatctatggtcttggtgatcctaagtcttatttgaaaatgatgcttcac
ttgagtcgtggtgaggttatggatcagcgtgatattttgcgccgtttggcggagctgcaa
tattcaagaaacgacgtcgcatttgaacgtggtcagtttcgcgtgcgcggtgaagtgatt
gatgttttcccggctgaatctgatcaagatgcggttaggattgagatgttcgatgacgaa
gtcgattgtattagtatctttgacccactaactggtgcagttaagcaaagagatttaccg
cgctttacggtttatccaaaaactcactatgtaaccccacgagagaaaatccttgaggcg
attgagaagattaaggatgagctgcgcgatagggctcaatacctaaaagataataataag
cttctcgaagaacagcgtatctctcaaagaactcagtttgatatcgaaatgatgacggag
ctcggtttctgctcgggtatcgaaaactactctcgctatttgagtggacgtaatgaaggt
gaagcaccgccaaccttgtttgattacttacctaatgatggtctgctgatcattgatgag
tcgcatgtaacggtaccgcaaatcggtgccatgtataaaggtgatcgctctcgtaaagaa
accttggttgaatttggtttccgcctaccttcggcattggataaccgtccaatgaagttt
gaagagttcgaatcgatcgctcctcagactatttttgtgtcggccacgccgggtaattac
gaaatagaaaaatcagacggcgagattgctgatcaagtggtgcgtcctactggtttgtta
gacccaattatcgaagtaaggcctgtcgcgactcaggttgatgacctattgtctgaaatc
agaatacgttcagcgaaagaagagcgtgtgcttgtcactacgctaactaagcgaatggca
gaggacttaactgaatacctgagtgagcatggcgttaaagttcgttacttgcactcagat
atcgatactgttgaacgcgtagaaattatcagagacctacgtttgggcgagtttgacgtg
ttagtgggtattaacttacttcgagaaggtttggatatgccggaagtatcgctggtggcg
attcttgatgcggacaaagagggcttcttacgttctgagcgttctcttattcaaacaatt
ggtcgtgcggcacgtaacttggaaggtcgagcaattctatatggagactcaattactaag
tcgatgagaaaagcgattgatgaaaccgaccgccgcagagagaaacagcaggcctacaac
gaagagcaaggtatcacgccacaagcactgaaacgtaatatcaaagacattatggagttg
ggtgacctgaccaagtcgaaacagcagcgccagtcaaaacaagttcctctatctaaggtt
gcagagccttctgaaagttatgcggtgcttacgccacaacagcttgataaagagatcagt
aaactggaagcagcgatgtatcagcatgctcagaatttggaatttgaattggcggcacag
aagcgcgatgaaattgaacaactaagaaaacagttcattaccaatagctaa
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integrated database retrieval system
