Vibrio tarriae: CEQ48_09600
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Entry
CEQ48_09600 CDS
T08683
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vti
Vibrio tarriae
Pathway
vti03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CEQ48_09600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vti03400
]
CEQ48_09600
Enzymes [BR:
vti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEQ48_09600
DNA repair and recombination proteins [BR:
vti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CEQ48_09600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ASK55034
LinkDB
All DBs
Position
1:complement(864327..867794)
Genome browser
AA seq
1155 aa
AA seq
DB search
MTTHSLLSLFSAQGAGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHE
VEQFSHSEVALFPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQS
PRDFLLQHTLIVKRGDHFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD
PFRIDFFDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEAR
REPESVYSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDV
DYRYDQRNIDPLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLP
VLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLAC
QQTEKCSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLA
ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGG
AEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKA
TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL
VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS
SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI
IATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPE
ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQ
LHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGA
GELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEE
YIPDINTRLSMYKQIASVASEDELTELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKV
RKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFV
ADMLKNFQQNVLPAR
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgactacacactctttactctctctgttttcggcgcaaggtgccggagacaaaaaagcc
atcggtaatttacacggcgcaagtttagcgctggccattgcggaactcgccaatgctcat
acgagccatactttgctcgccgtgcccgatccacaaaccgcgctcaaattgctacacgaa
gtggaacagtttagccacagcgaagtggcgctcttccccgattgggaaacgctgccctac
gataatttttcaccccatcaggacatcatttctgatcgtatttcgcgtttgtatcagctc
ccaagcttaacgcgcggtatcacgattgtcccggtcagtaccttgcttcagcgccagtca
ccacgtgactttttgttgcagcacaccttaatcgttaaacgtggcgatcacttttcactg
gataaactgcgcttgcagttagaaaacagcggctatcgccatgtcgatcaggtctttggc
cccggtgaatacgccagtcgcgggtcgattcttgatctcttcccgatgggcagtagcgac
ccattccggatcgatttctttgatgatgaaatcgacaccattcgcacctttgatcctgac
aatcagcgctcaatcgctgaaatggatgaaattcgcctgctacccgcccatgagtttccg
acgactgccgcggcgatcgaagagtttcgtaaccgctggcgacagcgttttgaagcgcgc
cgcgagccggaatcggtttacagccaagtctctaaaggcacttggcccgcagggattgag
tattggcagccactcttttttgagcacagcgagaccctatttgattacctgcccgccaac
agccagcttttggtggttggcgagctggaaaaagccatcgaccagttcttgaccgatgtc
gattatcgctacgaccaacgcaatatcgacccactgcgcccactgctgccacccaatgag
ttgtggctgcgtaaagatgagctgtttgcccactttaaaactctgccgcaagtccaactg
acaagctcacctatcgagctgcgtgccggtcgaatgaatgcgcaagttcaaccactaccc
gtattggccgttgagcatcaaaacaaagagcctttggcggcactgcgccaatttagcgaa
caatttaccggcaaaatcattttctcagtcgagtcggaaggtcgccgtgaagcgctactg
gagttgttgcagcgcattaaactgcgcccgcaaagccaaaatgatttcagccttgcgtgc
caacaaacagaaaaatgctcactggtgctcggctcagcagagcgcggatttatctatggt
gataaccaagttgccttgatttgtgagagcgatttactgggcgatcgggtgattcaacgt
cgccgaaaaaaagatcgcaaaaacgtcaccaacagtgatgcggtgatccgcaaccttgcc
gaactcaaaccggggcaacccgttgtccatattgatcacggtatcggccgctacttaggc
ttacaaacccttgaagccggtggcatggtcagcgaatacgtgatgctggagtaccaaaac
gaagccaagctgtatgtaccggtttcatcactgaacctgatcagccgctactccggaggc
gcagaagaagccgcccaattgcataaattagggggtgaagcgtgggtcaaagcgcgccgc
aaagcggcggaaaaagtgcgcgatgtcgcggcagaacttttggatgtgtatgcgaagcgc
gaaatcaaaccgggctttaaattccatctcgaccgtgaacaatacgcgaccttcaaagcc
accttcccgtttgaagaaaccgatgaccaagcgatggcgatcaacgccgtgctatccgac
atgtgtcaagccaaagccatggatcgtttggtgtgtggtgacgtaggctttggtaaaacc
gaagtagcgatgcgcgccgcgtttgtcgcgaccgataacggcaagcaagtcgccgtgtta
gtccctacaactctactggcacagcagcattttgaaaatttccgcgaccgctttgctaac
ttgccgatccgcgtcgaagtgctctcccgctttaaatcagccaaagagcaaaaacaaatc
ctacaagatgtagcggacggcaaagtcgacattctggtcggtacccataagttgctctct
agcgaaattcgttttgcggatcttggcttgctgattgttgacgaagaacaccgtttcggg
gtgcgccaaaaagaaaaagtcaaagcgatgcgtgccgatgtggatattctgactctcact
gccacgccaatcccacgtacactcaacatggccatgagtggtatgcgtgacctgtcgatt
attgccacccctccagcgcgccgtttagccatcaaaacctttgttcgtcaaagtgaagat
agtgtgatccgtgaagcggtactgcgtgaaattatgcgcggtggtcaggtgtactttctg
cataatcaggttgaaaccatcgataaagtggccgcagatttagaaaaactggtgcctgaa
gcgcggattaccgtcgctcacggacagatgcgtgaacgtgagctggaaaaagtgatgaac
gatttctaccaccagcgtttcaatttgctggtgtgtaccacgatcatcgaaaccggtatc
gacgttccgaccgcgaataccatcatcatggatcgcgcagacagcttaggtttagcccag
ttgcaccagttacgtggccgcgtcggtcgttcgcatcaccaagcctatgcttacctgtta
acgccaccgcctaaagcgattaccaaagatgcggtcaaacgcctagaggcaattgcctct
ttagaagatttgggggctggctttactcttgccacgcacgacttagaaattcgcggggcc
ggtgaattgttaggcgaagagcaaagtggccagattcagtcggtcggttttactctgtat
atggaaatgctcgaacaagcggtcgaagccctaaaatcaggcaaagaacctgcgctggat
gatttactgcgtgagcagaccgaagtcgaaatgcgcctaccagccttgctgccggaagag
tacatccccgatatcaatacgcggttatccatgtacaaacagatcgccagcgtcgcgagt
gaagacgaattgactgaactcaaagtcgaattgattgatcgttttggtaaattaccggac
gccgcgttaaacttactcgccattgccgaactgaaactcaatgcgatgcgcctaaaagtg
cgtaaaattgaggcgcatgagcgtggcggatatgtagagttctatcccaatgctgacatt
aacccggtgtttttggttaaactgctgcaatcgcaaccaaagctactggcgatggatggg
ccaaccaaattgaaatttaccttgcctttggttgaacgcagcgcgcgcattcaatttgtc
gctgacatgttgaagaatttccagcaaaatgtactacctgctcggtaa
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