Vibrio tubiashii: IX91_09675
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Entry
IX91_09675 CDS
T03445
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vtu
Vibrio tubiashii
Pathway
vtu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vtu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IX91_09675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vtu03400
]
IX91_09675
Enzymes [BR:
vtu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IX91_09675
DNA repair and recombination proteins [BR:
vtu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IX91_09675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Glyco_tran_WecG
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AIW14469
UniProt:
F9TA99
LinkDB
All DBs
Position
1:2095925..2099386
Genome browser
AA seq
1153 aa
AA seq
DB search
MSNTSLLNLACSDRAGDKKQIGNLQGASLALAIAELAQQHGSHTLLAVPDPQTALKLQQE
LEQFATQEVALFPDWETLPYDSFSPHQEIISDRISRLYQLPTQSSGITIVPVNTLLQRQS
PRDYLMQHTLMVKVGDLFSLEKLRIQLEKSGYRHVDQVFGPGEYASRGSILDLFPMGSND
PFRIDFFDDEIDTIRTFDPENQRSIEDKQEIRLLPAHEFPTSESAIEDFRIRWRQRFEAR
REPESVYMQVSKGTWPAGIEYWQPLFFEQTETLFDYIPENTQLLTVGQLEPAIDTFLDDV
DYRYDQRKVDPLRPLLPPEELWLKKDELFSQFKQLPQVQLYVEPVSEKQGRCNPNISSLP
ELAVQHQNKEPMAALRQFSETFTGQIVFSVESEGRREALLELLQRIKLKPQESGDLQQAL
SGGNKFNLILGAAEHGFVFGDEQVALICESDLLGDRVIQRRRKDRKATNSDAVIRNLAEL
QPGQPVVHIDHGIGRYIGLQTLEAGGMTTEYVTLEYQNEAKLYVPVASLNLISRYSGGAE
DSAPLHKLGGEAWAKARRKAAEKVRDVAAELLDVYAKRELKPGYKFELDRGQYATFKAGF
PFEETDDQSMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKQVLQDIEEGKVDLVVGTHKLLSND
IKFKDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQSDDAVVREAVLREIMRGGQVYFLHNQVETIEKVAADLEKLIPEAR
VTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLMTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDELLREQTEVEMRLPALLPDDYI
PDINTRLSMYKQIASVTSEDELGELKIELIDRFGLLPDATKNLLSVAKLKLQAAALKVKK
IEAHDKGGFIEFYPDADINPMYLVKLLQSQPQKFAMDGPTKFKFTIPLVDRRKRIQFVSD
MLGEFQQNLLPKA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacacatcattacttaatctggcgtgctcagatcgcgccggagacaaaaagcag
attggtaaccttcaaggggcaagtttagcccttgccattgctgaactcgcacaacagcac
ggctctcacactctgctcgccgttcctgatccgcaaaccgcgttaaaactacaacaagag
ctagagcagttcgccactcaagaagtcgccttgttccccgactgggaaactttgccatac
gatagcttttctccccatcaggagattatttcagaccgaatttctcgactctatcagctg
ccaacgcaatcgagcggaatcactatcgttcccgtgaatacgttgttacaacgccagtcc
ccgcgcgactacttgatgcagcatacgctgatggtaaaagtcggtgatctgttctcacta
gaaaagctgcgcattcaacttgaaaagtcgggttatcgccacgtcgaccaagtatttggt
ccaggcgaatatgcaagccgaggctcgattttagatctcttccctatgggctcaaacgat
ccatttcgtatcgacttctttgatgatgaaatagatacgatacgtacttttgatcctgag
aatcagcgttcaatcgaagataaacaagagatacgtttacttccagcgcatgaatttcca
acttctgagagcgcaattgaagacttccgtattcgctggcgtcagcgtttcgaagctcgc
cgtgaacctgaatccgtttacatgcaagtctctaaagggacttggccagcaggtattgaa
tactggcagccactgttttttgaacaaacggagactttgtttgattacatcccagaaaac
acgcaactgttaacggttggtcaattagagcccgcgatagacaccttcttagatgacgtt
gactatcgctacgatcaacgcaaagtcgatccgctgcgcccactgctgccgcctgaagag
ctatggcttaagaaggatgaactgtttagccagtttaaacagttacctcaagttcagctg
tatgttgagccagtaagtgaaaaacagggtcgttgcaatcctaatatctcttccttgcca
gagcttgcggtacagcaccaaaacaaagaaccgatggccgctctgcgccaatttagcgaa
acctttaccggtcagattgtcttttcggttgagtctgaaggtcgccgtgaggctttgctt
gaattactccagcgaattaagttaaaaccgcaagaaagcggcgacttacagcaagcacta
agtggtggtaacaagttcaatctgatccttggcgctgctgagcacggtttcgtatttggc
gacgagcaagtcgcactcatctgtgaaagtgatttacttggcgaccgtgttattcagcgc
cgacgcaaagatcgcaaagccaccaatagcgatgcggtcattcgtaaccttgccgaacta
caaccgggacagcctgtggtgcatatcgaccacggtatcggtaggtacatagggctgcaa
accctagaagctggtggtatgacgacagagtacgttacgcttgagtaccaaaatgaggcc
aaactctacgtgcctgtcgcttctctcaaccttataagccgttattctggtggcgcagaa
gatagcgcgccactccataagcttggcggtgaagcttgggctaaagcaagacgtaaagcc
gctgagaaggtgcgtgatgtcgcggctgaacttttggatgtttacgccaagcgtgaactt
aagccgggttacaagtttgagttagaccgcggccaatacgcgacattcaaagcgggcttc
ccatttgaagagacagatgaccaatcaatggcgatcaacgccgttatgtctgacatgtgt
caggctaaagcgatggatcgtttggtatgtggtgatgttggctttggtaaaactgaagtc
gcaatgcgtgcagcattcgttgctaccgacaatagtaagcaagtcgcagttcttgttcca
actaccctacttgcccagcagcactttgagaacttccgcgatcgctttgctaacttgcca
attcgagtcgaagtcttgtctcgcttcaaaacagccaaagagcagaagcaggtactgcaa
gatattgaagaaggtaaagttgacttagtggtcggtacccacaagcttctatcaaacgac
attaagttcaaagatcttggtctgctgattgttgatgaagaacatcgttttggcgtacgt
cagaaagaaaagatgaaagcgatgcgcgccgatgtcgatattttaacccttaccgcaacg
cctattcctcgcaccctgaatatggccatgagtggcatgcgtgatctgtcgattatcgcg
acgccaccagcgagacgtctcgcaatcaaaaccttcgtcagacagagcgatgacgcagta
gtgcgagaggctgtgctacgtgagattatgcgtggtggtcaggtttacttcttacacaat
caagttgaaaccatagaaaaagtcgcggccgatctggagaagttgattcctgaagcgcgc
gtaaccgtcgcacacggccaaatgcgcgagagagaactcgaacgcattatgaatgacttt
taccaccagcgctttaacttgctagtgtgtaccaccatcattgaaacgggtatcgatgta
ccaacagccaacaccattattatggatagagcagataatcttggtttggctcagcttcac
cagttgcgtggtcgtgtcggtcggtcgcatcaccaagcctatgcttacttaatgacgccc
catccaaaagctatgaccaaagatgcgattaaacgtctcgatgcgattgcgtcattggaa
gatctcggtgcgggctttaccttagctactcacgatttggaaattcgtggtgccggtgaa
ctacttggtgacgagcaaagtggccaaattcagtcggttggctttactctatatatggag
atgctagagcaagcagttgaagcgctgaaagaaggcaaagagccttcactcgacgagcta
cttcgagagcaaactgaagtcgaaatgcgcttacctgccctactgccggatgattacatc
ccagacatcaacactaggctctcgatgtacaagcaaattgctagtgtgacaagtgaagat
gagttaggtgaacttaagattgagctgatagaccgttttggtttattgcctgatgccact
aagaacctgctctcagtagctaagttgaaactgcaagcagcggcgctgaaagtgaagaag
attgaagctcacgacaaaggtggctttatcgaattctatccagatgctgacattaaccct
atgtatttggttaaactattgcaatctcagccacaaaaattcgcaatggatggacccact
aagttcaagtttacgataccattagtagatagacgtaagcgcatccagtttgttagtgac
atgttgggtgaattccagcaaaatttattgccaaaagcgtaa
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integrated database retrieval system
