Vigna umbellata (ricebean): 124823688
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Entry
124823688 CDS
T09662
Name
(RefSeq) general transcription factor IIH subunit 2-like isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03022
Basal transcription factors
vum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124823688
09124 Replication and repair
03420 Nucleotide excision repair
124823688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vum03021
]
124823688
03400 DNA repair and recombination proteins [BR:
vum03400
]
124823688
Transcription machinery [BR:
vum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124823688
DNA repair and recombination proteins [BR:
vum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124823688
BRITE hierarchy
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
VWA
Motif
Other DBs
NCBI-GeneID:
124823688
NCBI-ProteinID:
XP_047151914
LinkDB
All DBs
Position
Unknown
AA seq
417 aa
AA seq
DB search
MNNAAERPLNGDVEDDDDDDGADLEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQ
YRRRLRNLAATAATSRIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIGKQVEVFIREFF
DQNPLSHVGLVTIKDGIANCITELGGSPESHINALMGKLDCSGDASLQNALELVLGCLNQ
IPSYGHREALILYSALSTCDPGDLMETIQKCKRSKIRCSVIGLAAEMFVCKHLCQETGGT
YSVALDESHFKELILEHAPPPPAIAEYATANLIKMGFPQRSAEGSVAICTCHEEAKAGGG
YTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVMFDEVSPSQNDSSRSFPNT
CFGCQESLLSQGNKPGLSVICPKCKQQFCLDCDIYIHESLHNCPGCESSRHSKSVTT
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgaataatgctgctgaaaggccactaaatggagacgtagaggatgacgacgacgacgat
ggtgcagaccttgaagcctgggagagaacttacgcagaagatagatcatgggaggctttg
caggaggatgaatctggacttcttcgccccattgatactacagccatttaccatgctcag
tatcgcagacgccttcgtaaccttgctgccactgcggctacttcacgaattcagaagggg
cttatacgatacctgtacattgtcgttgacctgtctaaggcagcatcagagagagacttc
cgaccaagtaggatggctgtgattgggaaacaggttgaggtatttatcagggaattcttt
gatcagaatccacttagtcacgttggtctggtgactataaaagatgggattgctaattgc
ataacagaacttggtggcagtcccgagtcccacatcaacgcattaatgggtaaactggat
tgctcaggtgatgcctccttacaaaatgcactagagcttgttcttggatgtctaaatcaa
atcccatcatatggtcatcgagaagctcttatcttatattcggctctcagtacgtgtgat
cctggtgatctcatggaaaccattcaaaaatgcaaaaggagtaaaataaggtgctcagtc
atcggtcttgctgctgagatgtttgtatgtaaacatctctgccaggaaactggcgggact
tattctgttgctctagacgagtcccactttaaagagttgatcctggagcatgcaccacca
cctccagcaatagcagagtatgctactgctaatttaattaagatgggtttcccacaacgg
tcagctgagggttctgtcgcaatatgcacatgtcatgaagaggctaaggctggaggggga
tacacttgtccaagatgcaaagttcgtgtctgtgagcttcccactgaatgtcgagtctgt
ggattgacccttatttcttcaccccatttggcaaggtcataccatcatctatttcctatt
gtgatgtttgatgaggtctctccatctcaaaatgattctagccgcagttttcctaatact
tgttttggttgtcaagaaagtcttctaagtcagggaaacaagcctggactttctgtcatt
tgcccaaaatgcaaacaacagttttgccttgattgtgacatctacattcatgagagctta
cataactgcccaggctgtgagagttccaggcattctaagtctgtaactacttaa
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