Vigna umbellata (ricebean): 124833768
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Entry
124833768 CDS
T09662
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03013
Nucleocytoplasmic transport
vum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124833768
03015 mRNA surveillance pathway
124833768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124833768
03041 Spliceosome [BR:
vum03041
]
124833768
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124833768
Spliceosome [BR:
vum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
124833768
BRITE hierarchy
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
124833768
NCBI-ProteinID:
XP_047164262
LinkDB
All DBs
Position
Unknown
AA seq
946 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLMKSQKFAPELEHLVDMTKVNMEVIKPWVTRRVTEFL
GFEDEVLINFIHSLLDAKEVNGKEVQIQITGFMEKNTGKFMKELWTLLLSAQKNASGVPQ
QFLDAKEEELLKKKAENDRITSEIQRKKDKEGRDILEERFKKLDGGFDSKDKDTASAPNS
KSKDSGYDRDGKETEKRNGVRARSRLSRSPHSPAVSTSPHRGSPSRSMSKSFSNSRSYSG
GRHRSKSMSRSPTARGRSPSFEKIHRSPRRRSISPHRHSPRRSPHRRSLYLRRRSGSRSS
YRSPSPIRRRIHSPVHRSSPSYRRRRSPSPVRRRRSPSPVRRRRSPSPVQRRRSPSPVQR
RRSPSPVRRRWSPSPVRRRRSPSLGRRHRSPLVRRRRSPSPDHHHRSPSLGRRHRSPSLG
RRHRSPSPGHKHRSPSPLGMWRSPGHRHRSPSPLGPRRSPSPKRRRSPSPRRRRSPVTRH
RSPSPVRRVPPISARNRSESPMQSPSPIQRRYGSRTPPHSPSPLRRRSPIPSKNRSPSIS
PQRSPRDEWSSQSPIHVSTSPNRKSSQRQQRSPMQSSIRRVRSSPVGSVRRGKALNKKSQ
ESMSTPEKSPNRSVSAEARSETSSEGRSPHGNTMKQKEELSNKRSLSPLKKQRTQKSSHE
SPQTRDEAEETYYSRERRDSKVNSSHKIVRQSPASTRKGSPAKYGHEDEFSPERDAGHPA
SEHNNDWSKKDREIKGDKSAGKGNEFLSQQKPSVNKETFSREKPRESVDIKKSDDKDQSR
SNYAKSSDRHHKSEATPYLVGRDDIGNQSASHDSDSEESGKHRREGKDRKRHKRSEKKYA
SSDEDYSYDSKIEDRKEAKKRRKEEKKLRKEDKRRRREERRRRREERRAEKLKLKSKTDN
ISDDEEAGRDYHQSDGEETPSEQKKLEIELRNKALESLKAKRGINN
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggaggtttctttcgaggcacatccgcggaccaggacactcggttttcgaacaag
caagccaagctgatgaaatcacagaagtttgcaccggaattggagcatctggtggacatg
acgaaggtgaatatggaagtaattaagccttgggtcaccagaagggtgaccgagtttctt
ggtttcgaggatgaagtgcttattaacttcatacacagtcttctggatgctaaggaagtg
aacgggaaggaagttcaaatacaaattactggatttatggaaaagaacaccggaaagttc
atgaaagaactttggacacttcttctcagtgcacagaaaaatgccagtggtgttcctcag
cagttcttggatgccaaggaagaagaacttttgaagaagaaggctgaaaatgatcgtata
accagtgaaattcagaggaaaaaggataaggaaggtagagatattttggaagagaggttt
aagaaactggacggtggatttgattccaaggataaggatactgcatcagctccaaattca
aagtcgaaggattcaggatatgatcgagatgggaaggaaactgaaaagaggaatggtgtc
agggcaaggagcagactttctaggtccccacattcacctgcagtttctacttcacctcat
cgaggctcaccctcaaggtcaatgagcaaatcattttcaaattcccgaagttattcaggt
ggtagacacaggtcaaaaagtatgtctaggtctccaacagctcgaggacgctctccttct
tttgaaaagattcaccgttctccacgaagacgatctatttctcctcatcggcattcacca
cgacgttctcctcataggaggtcactttatttgaggagaagatctggatctcgctcaagc
tacagatctccttctcctatacgacgtagaattcattcaccagtgcaccgaagttcacct
tcttatcgacgtcgaaggtcaccttcaccggtgcgacgacgaaggtcaccttcaccagtg
cgacgacggaggtcaccttcaccggtgcaacggcggaggtcaccttcaccagtgcaacga
cgaagatcaccttctccagtgcgacgacgttggtcaccttctccagtgcgacgacgcagg
tctccttctcttgggagaagacatagatctcctttggtacgacgacgtagatctccgtct
cctgatcatcatcatagatcaccgtctcttggtcgtcgtcatagatcaccgtctcttggt
cgtcgtcatagatcaccatccccagggcacaaacacagatccccatcacctcttggaatg
tggagatcacccggtcacagacatagatcaccatcacctcttggaccacgaagatcacct
tcacctaaacgacgaagatcaccttcacctagacgacgaagatcacctgtcactcggcat
agatcaccttctccagtccgtcgagttccaccaatcagtgctcggaatagatcagaatct
cccatgcaatccccctccccaatacaacgaaggtatggtagtagaactcctccacactca
ccatccccattgcgacgcagatcacctattcctagcaagaatagatctccaagtatctcc
cctcagaggtctcctcgagatgaatggagttctcagtctccaatacatgtttcaacctct
ccaaataggaaaagttctcaaagacaacaaagaagtcccatgcagtcttctataaggaga
gtcaggagtagccctgtggggtctgtacgaagaggcaaagctttgaacaaaaaatcacaa
gagtcaatgtccactccggagaaatctccaaatcgatctgtatctgcagaagcaaggagt
gagaccagcagtgaaggtagaagtcctcatgggaacactatgaaacaaaaagaagagtta
tctaataaaagaagcttgagtcctttaaagaaacaaagaacccagaaatctagccatgaa
agcccacagactagagatgaagcagaagaaacatactattccagagaaaggagagattct
aaagtaaactcatcacacaagatagtaagacagtcaccagctagtacgagaaaaggttca
cctgcaaaatatggtcatgaggatgagttctctcctgagagggatgcaggtcatccagct
tctgaacataacaatgattggagtaagaaagaccgggaaataaaaggggataagtctgct
ggaaaaggcaatgaatttctttctcaacaaaagccctcagttaacaaggaaactttttcg
agggagaagcctcgtgaatctgtagatattaaaaaatcagatgacaaggaccaatcccgt
tcaaattatgccaaaagtagtgatcggcaccacaaatcagaagccactccatatttagtt
ggaagagatgatattggcaatcagagtgcttcacatgattctgattctgaggaaagtggt
aagcatagacgagagggcaaggacaggaaaaggcataaaaggtctgagaaaaaatatgcg
tcttctgacgaggattatagttatgattctaagatagaggacaggaaagaggctaagaag
aggagaaaggaggagaagaagttgcggaaggaggataagcgtagaagacgggaagagagg
cgtcgcagaagggaagaacgacgtgcagagaagctgaagctgaaaagtaaaacagacaat
atttcagatgacgaggaagctggacgagattatcatcaaagtgatggtgaagagacacca
tctgagcaaaagaagcttgagattgaattgcggaataaggctcttgaatccctcaaagca
aagaggggcatcaataattaa
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