Vigna umbellata (ricebean): 124843148
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Entry
124843148 CDS
T09662
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124843148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vum03041
]
124843148
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124843148
Spliceosome [BR:
vum03041
]
Complex A
U2 snRNP components
U2 related factors
124843148
Complex B
124843148
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
FeoA
Motif
Other DBs
NCBI-GeneID:
124843148
NCBI-ProteinID:
XP_047175754
LinkDB
All DBs
Position
Unknown
AA seq
1133 aa
AA seq
DB search
MDEGKHKSRKEIHELKDGDSKRSHRDRDRDRDRTGERGKDKNDGRHRDREKRDRESRRHE
RERSTDSEDKHDRDREKRKDKDKDVDRERGREKKRERDRDRDDRERTDRVREKEKEREKK
EDKERIRERERERRDHEREKEKERERVRRAREREKRREVDSDYSDGESRERDRKRHKKED
GDYKKRERERSVSKPIRQSEEREGSPRKKSVGDDSDTKDGEKKPTREEEMENEQKRLDEE
MEKRRRRVQEWQELRRKKEEAEREKHGEVSTNEPESGKTWTLEGESDDEEGPGTEKHDTG
MDVDEDVEPADTEPKDVMVVDTDNGTIASDLQEGTVGTPEDEEIDPLDAFMNSMVLPEVE
KLNNAVTSVVSDKAIDIKAKDKGNEQSRGAQSRKGSNKSIGRIIPGEESDSDYADDEVER
DPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKTFYIEVKEISKITPEEAAAYRKQ
LELKIHGKDVPKPIRSWHQTGLASKILETIKKMNFDKPMPIQAQALPVIMSGRDCIGIAK
TGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCV
PVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDM
GFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDILQLV
EVRPDNERFLRLLELLGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTD
RESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKG
CAITFISEEEARYAPDLLKALELSEQTVPNDLKTLADSFMVKVNQGLEQAHGTGYGGSGF
KFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILAATKVN
APALPTPISAAQLISNGGLPVSFPSVLGLQTPTVLPGTGLPLAANDGAARAALAAMNLHR
NIEKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQFFPPGKI
PGPGERKLYLFIEGPTEQSVKTAKAQLKRVLEDITNQALQLPGGNQPGKYSVV
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atggatgagggaaagcataaatcgaggaaagaaattcacgagttgaaggatggagattct
aagaggagtcaccgcgaccgtgaccgtgaccgtgatagaactggagaaaggggtaaggat
aaaaacgatgggaggcacagggatagggagaagagagatcgtgagtcccgaagacatgaa
agagagaggagtactgattctgaagacaagcatgatagagacagggagaaacgaaaagat
aaagataaggatgtggatagggaaagaggtcgagagaagaaaagggaaagggacagggac
agggatgacagggagaggacagacagagtaagggaaaaggagaaagagagggaaaaaaaa
gaggataaggagaggatccgagagagggaaagggaaaggagggatcatgagagagagaaa
gaaaaggaaagagaaagggtgaggagagcacgagagagggagaagcgtagagaagttgat
agtgattacagtgatggtgaatctagggagagggatagaaagcggcacaagaaagaagat
ggtgattacaagaagagggagagggaaaggagtgtcagcaagccaatcaggcaatccgag
gaacgtgaagggagcccaagaaaaaagagtgtcggagatgattcagataccaaagatgga
gagaaaaaacctacccgtgaagaggagatggaaaatgaacaaaagaggttggatgaagaa
atggaaaagcggaggaggagagttcaagagtggcaagagctaagaaggaagaaagaggaa
gcagaaagagaaaagcatggcgaagtaagtactaatgaacctgagtctggaaagacctgg
acactagaaggggaatccgatgatgaagaaggaccgggtactgagaagcatgatacaggt
atggatgtagatgaagatgtcgaacctgctgatacggaacctaaagatgtgatggtggta
gacactgataatgggacaattgcatctgatctacaggagggaactgttggtacacctgaa
gatgaggaaatagatccattggatgctttcatgaattctatggttctacctgaagttgaa
aagctgaacaatgctgtgacatcagtagtttctgataaagccattgacataaaagccaaa
gataaagggaatgagcaaagtcgaggtgcacagtcaaggaaaggttcaaataagtctatt
ggcagaataattcctggtgaagagtctgactcagattatgctgatgatgaagttgagagg
gatccattggatgaagatgatgacgagttcatgaaaagagtgaagaaaacaaaagctgag
aagctttctttagttgaccattcaaagattgactatgaaccattcaagaaaactttttat
attgaggtgaaggagatctcgaagattactccagaagaagctgcagcatacaggaagcag
ttggaattgaagatacatggaaaggatgtgccaaagccaataagatcatggcaccagact
ggccttgctagcaaaattttggagacaataaagaagatgaactttgacaagcctatgcct
attcaagctcaggcactccctgtaatcatgagcggtcgagattgcatagggattgctaaa
actgggtcaggcaaaacacttgcatttgttctgccaatgctgaggcatatcaaggatcag
ccaccagttgttgccggagatggacctattgggcttattatggcccctacaagggaactt
gttcaacagattcacagtgatataaaaaaatttgcgaaggtgctaggtctcaggtgtgtg
cctgtgtatggaggctctggtgttgctcaacaaattagtgagttgaaacgaggtgctgag
atagttgtttgtacgccaggtaggatgattgacatattatgcaccagtagtggaaaaata
actaacttgcgtagagtcacttatctggtcatggatgaggctgatcgaatgttcgacatg
ggctttgaacctcaaattacacgaattgttcagaatattcgtccagatcgtcaaacagtt
cttttctctgctacattcccccgtcaggttgaaattctggctcgtaaggttttgaataaa
cctgttgaaatacaagttggcgggaggagtgtagtgaacaaagacatattacagttagtt
gaggtgagaccagataatgaaaggttccttagactcttagaattattaggggaatggtac
gagaaagggaagatcctgatatttgttcactcccaggagaaatgtgatagtctgttcaag
gatctgctcaggcatggttatccatgcctttctcttcatggggctaaggaccagacagac
cgagaatccacaatatctgactttaaaagcaatgtctgcaatttgttggttgcaacaagt
attgctgccaggggattagatgttaaggagctagaattggtgatcaattttgatgttcct
aaccactatgaagattatgtacaccgtgttgggcgcactggacgagctggccgcaagggt
tgtgccattacatttatatctgaggaagaggcaagatatgcacctgatctgttgaaagcc
ttggaattatctgagcagactgttcccaatgatctgaaaactcttgctgatagctttatg
gtaaaggtgaaccaaggactggagcaagcccatgggactggttatggaggaagtggcttt
aaatttaatgaagaggaagatgaggtaaggagagcagcaaagaaagcacaagccaaggaa
tatgggtttgaagaagacaagtcagattctgaagatgaagatgaaggtattcggaaggca
ggaggtgatatctcacagcatcctgctcttgcacagattcttgccgccactaaagttaat
gctcctgcattgcctactcccatctctgctgctcagctgatttcgaatggtggactacct
gtttcttttccgtctgttcttggtctccagaccccaacagtcttgcctgggactgggcta
ccccttgctgcaaatgatggggcagctcgagcagcactagctgcgatgaacctgcatcgc
aacatagaaaaaatacagtcagaagcattaccggagcattatgaggctgagttggaaata
aatgatttcccccagaatgctcgctggaaagttactcataaggaaacattaggtcccata
tctgattggacaggagctgccattaccaccagggggcagttcttcccacctggaaagatc
ccaggacctggagaacgcaaactctacttgttcattgaaggtcctactgagcagtctgtt
aagacagctaaagcacaattgaaacgtgttttggaagacatcacaaatcaggctttgcaa
cttccaggtggaaatcaaccgggcaaatactctgttgtgtaa
DBGET
integrated database retrieval system
