Vigna umbellata (ricebean): 124844672
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Entry
124844672 CDS
T09662
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03013
Nucleocytoplasmic transport
vum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124844672
03015 mRNA surveillance pathway
124844672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124844672
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124844672
mRNA cycle factors
P-body specific factors
124844672
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
124844672
NCBI-ProteinID:
XP_047177606
LinkDB
All DBs
Position
Unknown
AA seq
539 aa
AA seq
DB search
MMEERKMKVRSEREKTKVVIRHLPPSLTQSDLFHHIDSHFASRYNWFSFRPGNTSHKRQR
HSRAYIDFNSPHDVFQFAEFFDGHVFVNERGAQHKAIVEYAPSQRVPKPTTKKDGREGTI
YKDPDYLEFLKLIAKPHEHLPSAEIQLERKEAEQAGANKETPIVTPLMEYVRQKRAADTG
MQASSAVAKVSRRSRAALPGKPGSGNTKRGSEKKKYVQKDNAKSAVRRESKDKSSFIVVP
RREDLSAESSMKGISEIEALHGIEGSISGIPLSSDSGKKKILLLKGKQREIPSATEGTVK
QQNLQSGNSPISTHPKQNQRRENSGRLIRSILLNNEARQSQSTTGTQHKIQILSSENGKR
PPRPFGSRSGLNDQHSYHDTAQVNSEGDSKSALDEKFVKRDPHGLGSGEKTEKRTRSKDR
PDRGVWTPLRRSDVSHASSDYSSSTMAQPTLSNPESTEGEVKENVTSWNRGSEISASAGG
RGNPSIENGSQRNFARRGASYVVKDDGAVGISEGKHSKKSVGHSAHEKQVWVQKSSSGS
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagaaaggaagatgaaggttcggtcggaaagggagaagacgaaagtggtgatt
aggcatttgcctccttcgctcactcaatccgatctcttccaccacatcgattcgcacttc
gcttcacgctacaattggttctctttcagacccggcaacaccagccacaagcgtcagagg
cattcccgagcctatatagacttcaattctcctcatgatgttttccagttcgctgagttc
ttcgatggacatgtttttgttaacgagagaggtgcccaacataaagcgattgttgagtac
gccccttcccagcgtgttccaaagccaactaccaagaaggacggacgtgaagggaccatc
tacaaagatccagactatctggagttcctcaaactcattgcaaagccacatgagcatctt
cccagtgcagagatacaattggaaagaaaagaagctgaacaagctggggctaacaaggaa
acacctattgtcactcccttgatggaatatgttcgacagaaacgtgctgctgacactggt
atgcaggcctcatcagcagtggcaaaagttagcagaagatccagagctgctttgcctggc
aagcctggctcgggcaatactaaacgaggatctgaaaagaagaagtatgttcagaaggac
aatgccaagagtgctgttcgcagagagtcaaaagacaagtcatcctttattgtggttccc
cggcgagaggatctatcagctgaatcaagtatgaaaggaatttctgaaattgaagcattg
catggcattgaaggttccatttctggaattccactgtcttctgactcgggaaagaaaaaa
atccttcttctaaaagggaaacagcgggaaattcccagtgccactgagggtacagtaaaa
cagcaaaacctacaatctggaaattctcctatttcaactcatccaaaacagaaccagaga
cgggaaaatagtggaagattgatcaggagcatacttctaaataatgaagctcgtcaaagt
cagtctactactgggacacaacataaaattcaaattttaagttcagagaatgggaagcga
ccacctcgtccttttggttcaaggtctgggttaaatgatcaacattcatatcacgacact
gcacaagttaattctgaaggggattctaagagtgctttggatgaaaaattcgtaaaaagg
gatccacatggtctgggtagtggtgagaaaacagaaaaacgtactagaagcaaggataga
cctgatcgtggtgtttggacaccccttcgtcgttctgatgtttcgcatgctagtagtgac
tactcatcatccacaatggcacaacctactctgtcaaatcctgaatccactgaaggagaa
gtaaaagaaaatgttacttcttggaacaggggaagtgaaatctctgcttctgcaggtgga
cgaggcaatccttctattgagaatggttcccaaagaaattttgcacgtcgtggagcttcc
tatgtagtgaaggatgatggtgcagtcggtataagtgaagggaaacattcaaagaaaagt
gttgggcacagtgctcatgagaagcaagtctgggttcagaaatcttcttcagggtcttaa
DBGET
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