KEGG   Vigna umbellata (ricebean): 124847206
Entry
124847206         CDS       T09662                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
vum  Vigna umbellata (ricebean)
Pathway
vum03030  DNA replication
vum03410  Base excision repair
vum03420  Nucleotide excision repair
vum03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    124847206
   03410 Base excision repair
    124847206
   03420 Nucleotide excision repair
    124847206
   03430 Mismatch repair
    124847206
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vum03032]
    124847206
   03400 DNA repair and recombination proteins [BR:vum03400]
    124847206
Enzymes [BR:vum01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     124847206
    6.5.1.6  DNA ligase (ATP or NAD+)
     124847206
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     124847206
DNA replication proteins [BR:vum03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    124847206
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     124847206
DNA repair and recombination proteins [BR:vum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     124847206
   NER (nucleotide excision repair)
    Other NER factors
     124847206
   MMR (mismatch excision repair)
    Other MMR factors
     124847206
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 124847206
NCBI-ProteinID: XP_047180600
LinkDB
Position
Unknown
AA seq 786 aa
MLALHFRSSFGSSFRLSFCFSRTVRVPSLVSFPLSLFSVPLRVMSKPPSAFDALMAAAKK
NSKSKTSKLSSPPKKRKSPLSTSSQNPSNPKSPKLPSPPITVEPEQAVKQEEVAKPEAVK
PEPRKVRQLSTSSSKGKTEELKKQVAQLKQKPSSFDPASMIAWEKGQPVPFLFLALAFDM
ISQESGRIVITDIVCNVLRTVMLATPEDLVPVVYLSANRIAPAHEGLELGIGESIISKAL
AEAYGRNENWIKTQYQKKGDLGLVAKESRSSQPMMWKPEALTIRKVFNTFRLIAKESGKD
SQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGYAEQTLLAALGQAAAYTEEHSKPPP
EIQSPFEKASDIVKQVYSVLPDYDKIISALLTEGLWKLPKTCKFTPGVPIRPMLSKAAKS
VTEVLNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRQAERNTEKFPDVAAAVSRLKK
TSVSSFILDCEIVAYDRATQKLLSFQTLSTRARKKVEIEDIKVNVCVFAFDLLYLNGQEL
LQENLRVRREHLYASFEEESGFLQFATALTSNDVEEIQNFLDQAVGASCEGLIIKTLNED
ATYEPAKRSLNWLKLKKDYMDNLGDSVDLVPIAAFHGRGKRTGVYGAFLLACYDNNNEEF
QTICKIGTGFSESVLVERSSSLRSQVISKPKSYYRFGETLNPDVWFEASEVWEVRAADLT
ISPVHRAAAGIVDPNRGISLRFPRLVRVRHDKAPEQATSSEQIAELYKAQKHNQANKQDD
EDEEDY
NT seq 2361 nt   +upstreamnt  +downstreamnt
atgctcgcattgcattttcgatcctcttttggttcttcttttcgtctttctttctgtttc
tctcgaactgttagggttccttctctcgtctctttccctctttctctcttctctgtccct
ctccgcgtcatgtctaagccaccatccgccttcgacgctctcatggccgccgctaagaag
aattccaaatccaaaacatccaagctttcatcacctcccaagaaaagaaaatctccactc
tccacttcctcacaaaaccctagcaaccccaaatctcccaaactgccttctccgcccata
accgttgaaccggagcaagcagttaaacaggaagaagttgctaaaccagaagctgttaag
ccggaaccgcggaaggtacgccaactgtcaacgtcttcttcgaaggggaagacggaggag
ctgaagaagcaagttgcgcagctgaagcagaagccttccagtttcgatcccgcttcgatg
attgcatgggagaagggacagcccgtgccgtttctctttctcgccttggcattcgatatg
atttctcaggaaagtggaagaatagttatcactgacattgtttgcaatgtgctgcggact
gtgatgctggccacgccggaggatcttgttcccgtcgtttacctctccgcaaaccggatt
gcgcctgctcatgaagggttggaattgggaatcggcgagtcgatcatttccaaggcgctc
gcggaggcttatggaaggaacgagaattggattaagactcagtatcagaaaaaaggtgat
ttgggcttggtcgccaaagagagccgttcatctcaacctatgatgtggaagcctgaagca
ttaaccatcaggaaggttttcaacacttttcgccttattgctaaggaatctggaaaagac
agtcaagagaaaaaaaagaatcatatcaaggcacttcttgttgctgcaactgactgtgaa
cctcaatatctaattcgtttgcttcagacgaagttgcgaattggttatgcagagcaaact
ctattggctgcactaggccaagctgcggcatacactgaagaacactctaaaccgcctcct
gaaattcagtctccttttgaaaaggcttcggatattgttaaacaagtctattctgttctt
cctgactatgacaaaataatatctgcactgcttacggagggtctatggaagcttccaaag
acttgtaaatttactccaggtgttccaattagacctatgctatcaaaggcagcaaaaagt
gtaactgaagttctgaacaaattccaggatgtggaatttacctgtgaatacaaatacgat
ggagagcgtgcccagatacattacttggagaatggttcagttgagatttacagtagacaa
gcagaacggaacaccgagaagtttcctgatgttgctgctgcagtttcaaggttgaagaaa
acaagtgtatcttcatttattcttgattgtgaaattgttgcatatgaccgtgcaacacaa
aaacttctttctttccagaccctcagtactcgagctcgcaagaaagtagaaattgaagat
ataaaggttaatgtttgtgtatttgcttttgatttgttgtatctaaatggccaagaactt
cttcaggaaaaccttagagtccgcagagagcatttatatgcctcttttgaggaagaatct
ggttttctccagtttgcaacagcattaacttcaaatgatgttgaggagatacagaatttt
cttgaccaagctgttggtgctagttgtgagggattgattattaagacactaaatgaggac
gctacatatgaacctgccaagcgatcactcaactggctaaaactgaagaaagattatatg
gacaatttaggggactctgtagacttggtacctattgctgctttccatgggcgtggaaaa
cgtacaggagtctatggtgccttcctccttgcttgctatgacaacaataatgaagaattt
caaactatttgcaagattggaacgggtttctctgaatctgtacttgtagaacgttcttcc
agtcttcgctctcaagtgatttccaagccgaagtcatactatagatttggggaaacactc
aatcctgatgtctggtttgaagccagtgaggtgtgggaggtgagagcggcagacctgacc
attagccctgtccaccgtgctgcagcgggcatagtagatccgaacaggggcatctctctt
cgatttccaaggctggttcgagtccggcatgacaaagctcctgaacaggccacatcatct
gagcagattgctgagttgtataaagctcaaaaacacaatcaagcgaataaacaagatgac
gaagatgaagaagattattga

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