Vigna umbellata (ricebean): 124847998
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Entry
124847998 CDS
T09662
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124847998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vum03021
]
124847998
03019 Messenger RNA biogenesis [BR:
vum03019
]
124847998
Transcription machinery [BR:
vum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124847998
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
124847998
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
124847998
NCBI-ProteinID:
XP_047181559
LinkDB
All DBs
Position
Unknown
AA seq
581 aa
AA seq
DB search
MSERQQIQYSECNQFSTSITYSPSNGYQPEILKALIDAYGKEESRECPSSKPLLVEQMHG
NCIENKVWSKSWQNTEEEEFDWKDLKSTIVDHSRNKSTLPSTGFFSREIPVVAASATLSE
QNASKGWSTGSQLPLLHDSSAMAMKHSLVSSQSHDAMKIPHHRYNSSQRIFSRMGQSRTL
TNTPINHIPKSYENPNGVRHAVPIMASGIPSNVKPPPSLVLAASETRPSVNQNVTRSPTM
KHAVNNSMIVPAQSGGAFEKKDAYTTHMHQFPEKLPGQVSSNQKNHWKAPQPKFFPSQDP
STKQFGHGMDFLKRSGASTSTTMSNTLPTVLFPSPLPSIANYPFHPGHPPASSQMMIPHS
NVGPFMSSKQPPDTDQIFHADISSDKLLPPQNSIGTEFKADILKVRHESVINGLYGDLPR
QCRSCGLRFRSQEEHRSHMDWHVTKNRKQRICREWFVRERMWLSGAEAVGTKSVAAFFPT
ERKEETKDEQELAVVAEEEQKRCALCEEAFEEFYSDEMEEWMYRGAAYLYQPTEKLATSM
ERSQLGPIIHAKCRSDLKMPLSKHLPEDDYQEGTPSKRMRI
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaggcaacaaatacagtattctgagtgtaatcaattttcaacttctatcacc
tacagccctagtaatggatatcagcctgaaatattaaaagctttaattgatgcatatggc
aaagaagaaagccgagaatgtccaagcagtaaaccactactagttgaacagatgcatgga
aactgtatagagaataaagtgtggtcaaaatcatggcagaatacagaagaggaggagttt
gactggaaagatttgaagtcaaccattgtagaccatagcaggaataaaagtacattacct
tcaaccggttttttttccagggaaatacctgttgttgcagctagtgcaactttgtcagag
caaaatgccagcaagggttggtctactggatctcagcttcctctacttcatgattcctct
gctatggcgatgaagcatagcctggtctcctctcaatctcatgatgctatgaagattcct
catcatcgctataactcgtctcaacgtatctttagtagaatgggtcaatcaaggactctt
acgaacactccaattaatcacattcccaaaagttatgaaaacccaaatggggttcgacat
gcagtgccgataatggcttctggcattccctctaatgtgaaacctccaccatcacttgtg
cttgcagcttctgaaacaaggccttctgtaaatcagaatgtcactcgatctcctactatg
aagcatgctgtaaataactctatgattgtaccagcacagtcaggtggcgcctttgagaag
aaggatgcatatactacacatatgcatcagtttcctgagaaacttcctggccaagtttct
tccaaccagaaaaatcactggaaagcaccacagcccaagttttttccatctcaggatcca
tcaaccaaacagtttggtcatgggatggattttttgaagagatctggtgcatccacaagt
acaaccatgtcgaatacgttacctactgtgctattcccttcaccacttccaagtattgca
aactacccttttcatccaggtcaccctcctgcttcatctcaaatgatgatacctcattcg
aatgttggtccgtttatgtcaagcaaacagccaccagatactgatcaaatttttcatgct
gacatctcatcggataaactactgccaccacagaattccatcggaaccgagtttaaagca
gacattctgaaggttcggcatgagtctgtaattaatggcttgtatggtgatctccctaga
caatgcagaagttgtgggctgagattcagaagccaagaggaacacagaagtcacatggat
tggcatgtgaccaagaatcggaagcagagaatctgtcgtgaatggtttgtgagggagagg
atgtggcttagtggtgcagaggcagtgggaacgaagtcagtagcagctttttttccgaca
gaaagaaaagaagaaacgaaagatgaacaagagttggcggtggtagcagaagaggagcag
aaaagatgtgcattgtgtgaagaggcttttgaggagttttacagtgatgaaatggaggag
tggatgtatagaggagctgcgtacctgtatcaacccacagaaaaattagcaacaagcatg
gagaggtcacagttaggtcccataattcatgctaaatgcagatcagatcttaaaatgcct
ctctccaaacatcttccagaggatgattaccaagagggtaccccaagtaaacgaatgcgg
atttga
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