Vigna umbellata (ricebean): 124847999
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Entry
124847999 CDS
T09662
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124847999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vum03021
]
124847999
03019 Messenger RNA biogenesis [BR:
vum03019
]
124847999
Transcription machinery [BR:
vum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124847999
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
124847999
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf_UBZ
VHS
Motif
Other DBs
NCBI-GeneID:
124847999
NCBI-ProteinID:
XP_047181560
LinkDB
All DBs
Position
Unknown
AA seq
964 aa
AA seq
DB search
MFSQNLILPPENPRQAASFASKPMSNEIAIAAQKPPPSILVGRFKALLKQRDDELRLVAG
VPVPPPTTDEIVQIYDLLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVAA
DQKLPSLYLLDSIVKNFGQEYIKYFSLRLPEVFCEAYRQVQPSLHPAMRHLFGTWSKVFP
PSVLRKIEAELQFSAAVNTQSSTLNAVRASESPRPSHGIHVNPKYLRHLDHSTADSVGAE
KLDSSGNANNTNFGILGSKTHQILSGSGRLGISSSPSRSGLDRPLSASMDEYAADSSANR
LIERDSSHPAVDYGVGKAIGRDMELSEWQRKQYAGDGRNRFPTSITYSLSNGHQRQSPRA
LIDAYGSDKSQENSSTKRLLVERVDRNGIDNKVLPTSWQNTEEEEFDWEDMSPTLTDHSR
NNSILPSTIGFTRERPVVAANAALPEHDSRKGVWSSGSQLPPVDDSSAVAEDAFASLGFR
RPPLGQVPGFQNHVNHSLGSSHHLSNSSQHFFGNRGRARTLTFPPIDNIHNPDTNPYRVR
PAVSRMVSGRVSNVEPRPSVLPATLPAVNLNVTRPPALNPITPLQKHVRSQFEALQTSNP
VVNHVNKSSFMPEQSFDSVENKDASILKINQLPNQLPGLISSNQQNHRQAPQLQFFPPSQ
DSSNSQFSHGSSLQGHGASISTAMSNPLPIMQFHLPLQNVANNPLHLQGGARPPLPPGRP
LAPPQMIPHPNASPFMSSQQPTVGYTNLISSLMSQGVISLANQLPTQDSVGTEFNPDILK
LRYESAVNALYGDLPRQCTTCGLRFRCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSD
RMWLSGAEALGTESVPGFLPTETIEEKIDDEELAVPAEEDQNTCALCGEPFDEFYSDEME
EWMYRGAVYLHAPTGTTSGMDRSQLGPIIHAKCRSESNMAPSEDLGPDEKGGDEEGTQRK
RRRS
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgttctcccaaaatctgattctccctcccgaaaaccctagacaagcggcctcgttcgcc
tcaaaacccatgagcaatgagatcgcaatcgctgcgcagaaacctcctccgtcgattctc
gttggccgcttcaaggcactcctcaagcagcgtgatgacgaactcagactcgtcgcaggc
gtccccgttccgcccccgacaacagatgaaattgtccagatttacgacctccttttgtcg
gaactcacctgtaatttgaagcctatcatcaccgatctcacaatcatcgccgaacagcag
agggagcacgccaaaggcatcgctgatgcaatttgcgctcggattctcgaggtggcggca
gatcaaaagctcccctcactctatttgttggacagtattgtgaagaattttgggcaggaa
tacattaaatacttctctttacgtctgccagaagtcttttgtgaggcatacaggcaggtt
cagcctagtttgcatcctgctatgcggcatctttttgggacatggtcaaaagtttttccc
ccttctgtcctacgcaagattgaagctgaattgcaattttccgcagcagttaatacccaa
tcatccaccctgaatgctgtaagggcttctgaatctccgcggcctagtcatggcatacat
gttaatccaaaatacctgcgccacttggatcactcaaccgccgatagtgttggtgctgaa
aagttggattcatcaggaaatgccaataatacaaactttggcattctaggcagtaagaca
caccaaattttatcaggcagtggcaggctgggaatatcctcttccccttcaagaagtgga
cttgataggcctttgtctgcatccatggatgagtatgcagctgacagttctgctaacaga
ttaattgagagagactcttctcatcctgctgttgattatggagtaggcaaggcaataggt
agagatatggagttgagtgaatggcaacgaaagcagtatgctggtgatggtcgtaatagg
tttccaacttctatcacatacagccttagtaatggacatcagcgtcaaagtcccagagct
ttaatcgatgcatatggcagtgacaaaagtcaagaaaattcaagtactaagcgtttgcta
gtagaacgggttgatagaaatggtatagacaacaaggtattgcctacatcatggcagaat
accgaagaggaggagtttgattgggaagatatgagtccaaccttaactgatcatagtaga
aataacagtatattgccttcaactattggattcaccagggaaaggcctgttgttgcagct
aatgccgctttgccagagcatgattccagaaagggggtttggtctagtggatctcagctt
cctcccgtggatgattcttctgctgtagcagaagatgcatttgcttctttgggttttcga
cgaccaccactgggacaggtacctggattccaaaatcatgtcaatcatagtctgggttct
tctcatcatctgtccaactcgtcacaacatttctttggtaataggggccgggcaagaact
cttacatttcctcctattgataacattcacaatcccgatacaaatccatatcgggttcga
cctgcagtgtcaaggatggtttctggccgtgtctctaatgtggaacctagaccatcagtt
ttgcctgcaactctgcctgctgtaaatttgaatgtcactcgaccacctgcattaaatcca
ataactccattacaaaaacatgttaggagtcagtttgaagctttacagactagtaaccct
gttgtgaatcatgtaaataaatcttcgtttatgccagagcagtcatttgacagtgttgag
aacaaggatgcaagtattttgaagataaatcagttgcctaatcagcttcctggactaatt
tcgtccaaccagcaaaatcacaggcaagcaccacaactgcagtttttcccaccatctcag
gattcgtcaaactcacaatttagtcatgggagttctttgcagggacatggtgcttctata
agtactgccatgtcgaatccgttacctattatgcaattccatttgccactccaaaatgtt
gcaaataaccctttacatttacagggtggagcccggccacctttacctccaggtcgccct
cttgctccaccacaaatgatacctcatccaaatgccagtccatttatgtcaagccaacag
ccaactgttggatatactaatttaattagttctctaatgtctcaaggtgtgatctcattg
gccaaccagctgcctactcaggattctgttggaactgagttcaatccagatattctgaag
cttcgttatgagtctgctgtcaatgccttgtatggtgatctcccaagacaatgcacaact
tgtggactccgattcagatgccaagaggaacacagtagtcatatggattggcatgtgaca
aagaatcggatgtctaaaagccggaagcagaaaccctctcggaagtggtttgtgagtgac
aggatgtggcttagtggtgcagaggcattgggaactgagtcagttccaggttttttgcct
acggaaaccatagaagaaaagatagacgatgaagagttggctgttccagcagaagaggat
cagaatacttgtgcattatgtggagagcctttcgatgagttttacagtgatgaaatggag
gaatggatgtataggggagctgtatacctccatgctcccacggggacaacatcaggcatg
gacaggtcacagttaggccccataattcatgctaagtgcagatcagaatctaatatggca
ccatctgaagatcttgggccggatgaaaagggtggtgatgaagagggtacccaaaggaag
cgaaggcgtagttga
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