Vigna unguiculata (cowpea): 114164432
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Entry
114164432 CDS
T06017
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03022
Basal transcription factors
vun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114164432
09124 Replication and repair
03420 Nucleotide excision repair
114164432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vun03021
]
114164432
03400 DNA repair and recombination proteins [BR:
vun03400
]
114164432
Transcription machinery [BR:
vun03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
114164432
DNA repair and recombination proteins [BR:
vun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
114164432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
VWA
Motif
Other DBs
NCBI-GeneID:
114164432
NCBI-ProteinID:
XP_027904906
LinkDB
All DBs
Position
1:complement(27634589..27638582)
Genome browser
AA seq
418 aa
AA seq
DB search
MNNAAERPLNGDVEEEDDDDDADLEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQ
YRRRLRNLAATAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIGKQVEVFIREFF
DQNPLSHVGLVTIKDGIANCITELGGSPESHINALMGKLECSGDASLQNALDLVLGCLNQ
IPSYGHREALILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGT
YSVALDESHFKELILEHAPPPPAIAEYATANLIKMGFPQRSAEGSVAICTCHEEAKAGGG
YTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVMFDEVSPSQNDSSRSFPNT
CFGCQESLLSQGNKPGLSVVCPKCKQQFCLDCDIYIHESLHNCPGCESSRHSKSVTAS
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaataatgctgctgaaaggccacttaatggagacgtagaggaggaggatgacgatgat
gatgcagaccttgaagcctgggagagaacttacgcagaagatagatcatgggaggctttg
caggaggatgaatctggacttcttcgccctattgacactacagccatttaccatgctcag
tatcgcaggcgccttcgtaaccttgctgccactgcggctactgcacgaattcagaagggg
cttatacgatacctgtacattgtcgttgacctgtctaaggcagcttcagagagagacttc
cgaccaagtaggatggctgtgattgggaaacaggttgaggtatttatcagggagttcttt
gatcagaatccacttagtcacgttggtctggtgactataaaagatgggattgctaattgc
ataacagaacttggtggcagtcccgagtctcacatcaacgctttaatgggtaaactggaa
tgctcaggggatgcctccttacaaaatgcactagaccttgttcttggatgtctaaatcaa
atcccatcatatggtcatcgagaagctcttatcttatattcggctctcagtacgtgtgat
cctggtgatctcatggaaaccattcaaaaatgcaaaaaaagtaaaataaggtgctccgtc
attggtcttgctgctgaaatgtttgtatgtaaacatctctgccaggaaactggtgggact
tattctgttgctctagatgagtcccactttaaagagttgatcttggagcatgcaccacca
cctccagcaatagcagagtatgctactgctaatttaattaagatgggtttcccacaacgg
tcagctgagggttctgtcgcaatatgcacatgtcatgaagaggctaaggctggaggggga
tacacttgtccacgatgcaaagttcgtgtctgtgagcttcccactgaatgtcgaatctgt
ggattgacccttatttcttcaccccatttggcaaggtcataccatcatctatttcctatt
gtgatgtttgatgaggtctctccatctcaaaatgattctagccgcagttttcctaatact
tgttttggttgtcaagaaagtcttcttagtcagggaaacaagcctggactttctgtcgtt
tgtccaaaatgcaaacaacagttttgccttgattgtgacatctacattcacgagagctta
cataactgcccaggctgtgagagttccaggcattctaagtctgtaactgcttcttaa
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