Vigna unguiculata (cowpea): 114167710
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Entry
114167710 CDS
T06017
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114167710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vun03041
]
114167710
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114167710
Spliceosome [BR:
vun03041
]
Complex A
U2 snRNP components
U2 related factors
114167710
Complex B
114167710
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
114167710
NCBI-ProteinID:
XP_027908610
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All DBs
Position
2:32635230..32640442
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AA seq
1131 aa
AA seq
DB search
MDEGKHKSRKEIHEVKDGDSKRSHRDRDRDRTGERGKDKNDGRHRDREKRDRESRRHERE
RSTDSEDKYDREREKRKDKDKDVDRERGREKKRERDRDRDDRERTDRVREKEKERERKED
KERIRERERERRDHEREKEKERERVRRAREREKRREVDSDYSDGESRERDRKRHKKEDGD
YKKRERERSVSKPSRQSEEREGSPRKKIVGDDSDTKDGEKKPTREEEMENEQKRLDEEME
KRRRRVQEWQELRRKKEEAEREKHGEVSTNEPESGKTWTLEGESDDEEGPGTEKHDTGMD
VDEDDKPADMEPKDVMVVDTDNGTITSDLQEGTAGTPDDEEIDPLDAFMNSMVLPEVEKL
NNAVTSVISDKAIDIKAKDKGNEQSRGAQSRKGSNKSIGRIIPGEESDSDYADDEVERDP
LDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKTFYIEVKEISKIAPEEAAAYRKQLE
LKIHGKDVPKPIKSWHQTGLASKILETIKKMNFDKPMPIQAQALPVIMSGRDCIGIAKTG
SGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPV
YGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGF
EPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDILQLVEV
RPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRE
STISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCA
ITFISEEEARYAPDLLKALELSEQTVPNDLKTLADSFMAKVNQGLEQAHGTGYGGSGFKF
NEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILAATKVNAP
ALPTPISAAQLISNGGLPVSFPSVLGLQTPTVLPGTGLPLSANDGAARAALAAMNLHRNI
EKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQFFPPGKIPG
PGERKLYLFIEGPTEQSVKTAKAQLKRVLEDITNQALQLPGGNQPGKYSVV
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atggatgagggaaagcataaatcgaggaaagaaattcacgaggtgaaagatggggattct
aagaggagtcaccgcgaccgtgaccgtgatagaactggagaaaggggtaaggataaaaac
gatgggaggcacagggatagggagaagagggatcgtgagtcccgaagacatgaacgagag
aggagtactgattctgaagacaagtatgatagagagagggagaagcgaaaagataaagac
aaggatgtggatagggaaagaggtcgagagaagaaaagggaaagggacagggacagggat
gacagggagaggacagacagagtaagggaaaaggagaaagagagggaaagaaaagaggat
aaggagaggatccgagagagggaaagggaaaggagggatcatgagagagagaaggaaaag
gaaagagaaagggtgaggagagcacgagagagggagaagcgtagagaagttgatagtgat
tacagtgatggtgaatctagggagagggatagaaagcggcacaagaaagaagatggtgat
tacaagaagagggagagggaaaggagcgtcagcaagccaagcaggcaatcagaggaacgt
gaaggaagcccaagaaaaaagattgtcggagatgactcagataccaaagatggagagaaa
aaacctacccgtgaagaggagatggaaaatgaacaaaagaggttggatgaagaaatggaa
aagcggaggaggagagttcaagagtggcaagagctaagaaggaagaaagaagaagcagaa
agagaaaagcatggcgaagtaagtactaatgaacccgagtctggaaagacctggacgcta
gaaggggaatctgatgatgaagaaggaccgggtactgagaagcatgatacaggtatggat
gtagatgaagatgacaaacctgctgatatggaacctaaagatgtgatggtggtagacact
gataatgggacaattacatctgatttacaggagggaactgctggtacacctgatgatgag
gaaatagatccattggatgctttcatgaattctatggttctacccgaagttgaaaagctg
aacaatgctgtgacatcagtaatttctgataaagccatcgacataaaagccaaagataaa
gggaatgagcaaagtcgaggtgcacagtcaaggaaaggttcaaataagtctattggcaga
ataattcctggtgaagagtctgactcagattatgctgatgatgaagttgagagggatcca
ttggatgaagatgatgacgagttcatgaaaagagtgaagaaaacaaaagccgagaagctt
tctttagttgaccactcaaagattgactatgaaccattcaagaaaactttttatattgag
gtgaaggagatctcgaagattgctccagaagaagctgcagcataccggaaacagttggaa
ttgaagatacacgggaaggatgtgccaaagcctataaaatcatggcaccagactggactt
gctagcaaaattttggagacaataaagaagatgaactttgacaagcctatgcctattcaa
gctcaggcactccctgtaatcatgagcggtcgagattgcatagggattgctaaaactggg
tcaggcaaaacacttgcatttgttctgcctatgctgaggcatatcaaggatcagccaccg
gttgtagccggagatggacctattgggcttattatggcccctacgagggaacttgttcaa
cagattcacagtgatataaaaaaatttgctaaggtgcttggtctcaggtgtgtgcctgtg
tatggaggctctggtgttgctcaacaaattagtgagttgaaacgaggtgctgagatagtt
gtttgtactccaggtaggatgattgacatattatgcaccagtagcggaaaaataactaac
ttgcggagagtcacttatctggtcatggatgaggctgatcgaatgtttgacatgggcttt
gaacctcaaattacacgaattgttcagaatattcgtccagatcgtcaaacagttcttttc
tctgctacattccctcgtcaagttgaaattctggctcgtaaggttttgaataaacctgtt
gaaatacaagttggcgggaggagtgtagtgaacaaagacatattacagctagttgaggtg
agaccagataatgaaaggttccttcgactcttagaaatattaggggaatggtacgagaaa
gggaagatcctgatatttgttcactcccaggagaaatgtgatagtttgttcaaggatctg
ctcaggcatggttatccatgcctttctcttcatggggctaaggaccagacagatcgagaa
tccacaatatctgactttaaaagcaatgtctgcaatttgttggttgcaacaagtattgct
gccaggggattagatgttaaggagctagaattggtgatcaattttgatgttcctaaccac
tatgaagattatgtacaccgtgttggacgcactggacgagctggccgcaagggttgtgcc
attacatttatatctgaggaagaggcaagatatgcacctgatctgctgaaagccttggaa
ttatctgagcagactgttcccaatgatctgaaaactcttgctgatagctttatggcaaag
gtgaaccaaggactggaacaagcccatgggactggttatggaggaagtggttttaaattt
aatgaagaggaagatgaggtaaggagagcagcaaagaaagcacaagccaaggagtatggg
tttgaagaagacaagtcagattctgaagatgaagatgaaggtattcggaaggcaggaggt
gatatctcacagcatcctgctcttgcacagattcttgctgccactaaagttaatgctcct
gcattgcctactcccatctctgctgctcaactgatttcgaatggtggactgcctgtttct
tttccgtctgttcttggtctccaaaccccaacagttttgcctgggactgggctacccctt
tctgcaaatgatggggcagctcgagcagcactagctgcgatgaacctgcatcgcaacata
gaaaaaatacaatcagaagcattaccagagcattatgaggccgagttagaaataaatgat
ttcccccagaatgctcggtggaaagttactcataaggaaacattaggccccatatctgat
tggacaggagctgccattaccaccaggggacagttcttcccacctggaaagatcccagga
cctggagaacgcaaactctacttgttcattgaaggtcctactgagcagtctgttaagaca
gctaaagcacagttgaaacgtgttttggaagacatcacaaatcaggctttgcaacttcct
ggtggaaatcaaccgggcaaatactctgttgtgtaa
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