Vigna unguiculata (cowpea): 114186763
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Entry
114186763 CDS
T06017
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
vun
Vigna unguiculata (cowpea)
Pathway
vun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114186763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vun03041
]
114186763
03009 Ribosome biogenesis [BR:
vun03009
]
114186763
Enzymes [BR:
vun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114186763
Spliceosome [BR:
vun03041
]
Complex A
U1 snRNP components
U1 related factors
114186763
Complex B
114186763
Ribosome biogenesis [BR:
vun03009
]
Eukaryotic type
Pre-60S particles
Helicases
114186763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
114186763
NCBI-ProteinID:
XP_027930572
LinkDB
All DBs
Position
6:complement(26009646..26017545)
Genome browser
AA seq
1190 aa
AA seq
DB search
MATAEAASAGLGPRYAPDDPTLPQPWKGLIDGSTGVLYYWNPETNVTQYEKPAPLTSPLP
APVASAPSLAPIPVAHTMQAGGMAPQHGQQLMQGQPSQQQVGHLAQQHGQSMPPQQQQQQ
SPHMVQTTQQNPSQGGQSAPQQNSLMTQSVPQPGLHQARQQMMQPQGQMLQQPQGQQIQH
QMPPQTMHSQHFGQGMPQDHGSHIVPPQVHQFPTQNMHYMSYQQNIITPRQPNSQHIQPN
TVSPGQPNPQQVQHNMHGQPFENQQTAFQKVEETEFKNGSQVGLSPSQYPQRSTLPAQNN
QNLPADTASGQMPNVGVNAGQPQQFRTSLSGSVQKSPSAMPLQQGGSDLYYQHGPNFNKQ
MSPGMMHGHPSNVHPVGQKMSHEDNLRGRAGNEYYYNSNKDMPTMGRPQPDMTQIPVPRN
QQDMRIGNTPFQNVMPSGNGSGIAGNAMPSMFVPPMGGPSPLSNNTLMRPSYMGSSDASD
LSPAEIYCQQHEVTATGGDIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVAL
QGRDIVAIAKTGSGKTLGYLIPAFILLRQRQNNSLNGPTVLVLAPTRELATQIHNEVIKF
GRSSRVSCTCLYGGAPKAFQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEA
DRMLDMGFEPQIRKIVDEIPARRQTLMYTATWPKEVRKIASELLVNPVQVNIGSADELAA
NKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNIGRTFGAAAIH
GDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRT
GRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMAMRGPSNFGKERGGMSRF
DSGGGRWETGGRGSMRDGGFGGRGGMRDGGFGGRGGGMRDGGFGGRGGGMRDGGGFGGRG
GGMRDGGFGGRGGGGFGGRGGMRDGAGGRGDFFPGRGNRGRGSGGLRGGHVGWGRGERGM
DDRGQGRGRGRFDNRRDASYKSRGRSYSRSPDRVRTWDYSSSSRSRSRSRSRSWSRGRSR
SRSRSWSRGRSYSRSRSRSRSHTRSRSRSRSPSYDRRDRSVQQVPDRKDLRAHEVGTSDP
RMLPLSPGPGTQENSSLGSEQGQQQSVIGSSDPGNPEAVADISHQSGSGV
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagctgaggcagcttctgcagggcttggccctagatatgcgcccgatgaccct
actcttccacaaccgtggaaggggttgatcgatggcagcactggtgtgttatactattgg
aatcctgaaaccaatgttacacaatatgaaaaacctgcccccttaacgtcacccttgcct
gcgcctgtggcttctgcaccgagcttggcacctatacctgtggctcacacaatgcaggct
ggtgggatggcaccgcagcatgggcagcagttaatgcaagggcagccctcgcaacagcag
gtgggtcaccttgcccaacagcatggccagtcgatgccacctcagcaacagcagcagcag
agtccccatatggtgcagaccactcagcagaatccctctcagggtggtcagtctgcacca
cagcagaactcattgatgacgcagtcagtgccgcagccaggtttacatcaagccagacag
caaatgatgcagccccaggggcagatgttgcagcagcctcaaggacagcaaattcaacat
cagatgccgccacagacaatgcattctcagcattttggccaaggaatgcctcaggatcat
ggctcacatattgtacctccacaagtacatcagttccctacccaaaacatgcactatatg
tcatatcagcaaaacattattacacccaggcaaccaaactctcaacacattcagccaaac
actgtctcacctgggcaacctaatcctcagcaggttcagcataacatgcatggtcagccc
ttcgaaaatcaacaaacagcatttcaaaaggtagaggaaactgagtttaaaaatggaagt
caggttggactttcaccatcccagtatccgcagaggagtaccttgcctgctcagaataat
cagaaccttcctgctgacacagcttctggtcaaatgcctaatgtaggtgtcaatgctggt
cagccacagcaattcaggacttccttatcaggcagtgtacagaagtcaccctctgcaatg
ccattgcagcagggtggatctgatttatattaccaacatggtcctaactttaataagcag
atgagcccaggaatgatgcatggtcatccatccaatgtccatcctgttggccaaaagatg
agtcacgaggataatttacgtggcagagcaggaaatgaatattactataattctaacaaa
gatatgccaacaatgggtcgtccgcaaccagatatgactcaaatacccgttcctagaaat
cagcaggatatgaggatcggcaatactccttttcaaaatgtaatgccaagtggaaatgga
agtggtattgctgggaatgctatgcctagcatgtttgttcctccaatgggaggaccttca
cctctctctaataacactttaatgaggccttcctatatgggatcttctgatgcaagtgat
ctttcacctgctgaaatttactgccagcaacatgaagttacagcaacgggtggtgacatt
ccccctcctttcatgacatttgatgctactggttttcctccagagatattgagagagata
tattctgctggcttctcaaatccaacaccaatacaggctcaaacatggcctgttgcacta
cagggtagagacatagtagcaattgccaaaactggctcagggaaaacattgggttactta
atccctgccttcattcttcttagacagcgacaaaataattctctgaatggccccactgtc
ttggttttggctccaacacgggaacttgcgacacagattcataatgaggttatcaagttt
ggtcgatcatcacgagtctcttgcacgtgcttgtatggtggagcacctaaagcctttcaa
ctaaaggagttagatcggggagcagacattgttgttgccacacccggtcggctcaatgac
atacttgaaatgaagaaaattgactttgggcaagtttcactacttgtgcttgatgaggct
gacagaatgcttgacatgggttttgagcctcaaatccggaagattgtggatgagattcct
gcacgaagacaaactctcatgtacactgcaacctggccaaaagaagtaagaaaaattgct
agtgaacttcttgtgaatccagtccaggttaacattggaagtgcagatgagcttgctgca
aataaagccatcacacagtatgttgaagttgtcccacaaatggagaagcagaggcgtttg
gagcagatcctcagatcccaagaacgaggttctaaggtcataatattttgctccacgaag
aggttatgtgatcaactagctcgtaatattggccgcacttttggggctgctgcaattcat
ggagacaagtctcaaggtgagagagattgggttttaagtcagttccggactgggaagtca
ccaattctggttgccactgatgttgcagctcgtgggcttgatattaaggatataagggtg
gtaataaattatgatttccccactggaattgaggactatgtgcaccgtataggaagaact
ggaagagcaggtgctactggagtgtcatatacatttttctctgagcaggactggaaacac
gcaggtgatttaatcaaagttttggagggtgctaatcagcatgtgcttccagagttaaga
cagatggctatgcgtgggccatcaaactttggaaaggaacggggtgggatgagtaggttt
gattctggtggtgggcgttgggagactggtggtcgtggtagcatgagagatggtggcttt
ggtggtcgtggtggcatgagagatggtggctttggtggtcgtgggggtggcatgagggat
ggtggctttgggggccgtgggggtggcatgagggatggtggtggctttggtggtcgaggt
ggaggcatgagggatgggggatttggtggacgtggtggtggcggttttggtggacgtggt
ggcatgagggatggagctggtgggagaggtgatttctttcctggtaggggcaacagaggt
aggggatctggtggtcttcgtggtggtcatgttggttggggtaggggtgaacgtggtatg
gatgaccgtggacaggggcgcggacgtggccgatttgacaacagaagggacgcttcttac
aaaagtagaggaagaagttatagtcgaagcccagatagagtccgaacatgggattatagt
agtagtagcagaagccgtagtagaagcagaagcaggagttggagcaggggtcgtagtaga
agtcgaagtcgcagctggtctcgtggccgaagttacagtcggagccggagccggagccga
agccatacccgcagccggagtcggagccggagccccagttatgacaggcgggataggtca
gttcaacaagttcctgatcgaaaggatcttagggcacacgaagtgggaacttctgatcca
agaatgcttcccttgtctcctggtcctggcacacaggagaattcctctttgggaagtgaa
caagggcagcagcaatctgttattggtagctctgatccagggaatccagaagctgtagca
gacattagtcatcaatcaggttctggtgtttag
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integrated database retrieval system
