Vespa velutina (Asian hornet): 124950035
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Entry
124950035 CDS
T09814
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vve
Vespa velutina (Asian hornet)
Pathway
vve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vve00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124950035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vve03021
]
124950035
03019 Messenger RNA biogenesis [BR:
vve03019
]
124950035
Transcription machinery [BR:
vve03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124950035
Messenger RNA biogenesis [BR:
vve03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
124950035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_helical
CID
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
124950035
NCBI-ProteinID:
XP_047352069
EnsemblRapid:
ENSVVEG00005000076
LinkDB
All DBs
Position
6:8317332..8331364
Genome browser
AA seq
1898 aa
AA seq
DB search
MTSAKSKEIADEYISSLSDLTINSKPLINMLTMLAEDNVEHAPAIVQAVENHLQKVRSDI
KLPVLYLIDSIVKNVNGTYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPAK
KLFSLDVRVQSIDPAWPITASPTSISSGSIHVNPRFLSMPQQTATSIVQPIVPPVKLPPG
DPVSTTEAVMREQLLKKQRELLELQKKKIELELLQAKASLEQQQRQLDKQAGSLKTDIVV
PSTTTVRPSTESTTQGKPTTPVVSSPTPKQVTKQFPAAAASLLKNAGTNNGPRIAPASSI
AVASARPMSRDPRLKTASVQEVTTTDPRQRQSTTGQKEIRSGEGQTQLAPNINTVLSDQL
KHQLLPKQAVTSTINKPPTNLAGSDTQTINASNNTNANTNLNNNNKSFSGNANKDAVSHR
TSQKKDPRSSSNNSNNLNSNCSKSAQSSSLNSSSSTLSGSNRGGGGSDIKTKDVKSLSSR
SSSSSTIDKSSTSSKSSYRKIGNKSRSKQPQSSPSKVPKVDRDSSPVRSKSREKDSGDSS
PSSRTSPQSSFQTSKNRKKIKSRKRSPSSPYRIPRRNDTKSNSSLSSSGGVTEEEQSGSL
IVSPPHPPTFKEIRPNARQRNYVRRNKDDSLSPERSPVNSGNVQVTTEPTLESSSKDEDL
RATLPLPGTNTTVAEKKEDLDLRVLPPVNTNKRQSTEHLEPTAIKKTKAEKFDALFGNED
VDLRTLTHPKAGRPPTPPPPVISGEDGKDSWAKLKTPSKNDREKQVNNNDDKRDRDRNRD
RLGRLRLYNKLPDDPKDRRRTLSNEDQDSRPGRRGRENDKPERNEDRNIEIIMKQAAEQL
NQGSITKTQYNTLIQEVLHMSEDRKLRAAQRKEKEAGSIVWEKGVSLDINGPVDRTPNFS
PSGEKEVIRSKDHPIPRNPNGPRWQSQPWQQPGPWAHPPGPPYGGPQAHFNADFRPVGPW
QNPRHFGPMRPDYQYHGGYNHNIGPNPRLGPGMMGPIGPNGPIISNLLPNGPIGPIGMPN
PSLSLSGMNGPGIIMNNGPIPSLMSNPNIPSLSTGRNVSPNATATKYDLEDGDQNYNAAL
PKNQGPHSRELPPPDSQLLDEIARDTMKSINIDNIPREIRYYGQTGVVFMNWDDPREIGF
QDGVRRILIDDKDTITCAFNDQYKEFMYDGEVHRIKLGAPTRELYVDDRWYECYFGGMPV
TIELGGKKVNIKLEGPPPQVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQIFEIEG
KPHTLEFIDALQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGIRAGYVKIAGM
RGEEPIEAPSTPPLLNQKPKIDTTPTPTQLPSIEQESTSQDGSDLISTPKPDLQLDILSS
VLPSAMAPSSGLSYQAEPVENPPTSTPALSLPLNMNELFQRLVETGIVPNLTEKKKQEEE
EKKDPEIIPVSFDKPETLKVKQPAIAAALYSGMQCSSCGARFAPELATRYSHHLDWHFRQ
NRRERDSARKAHSRPWYYDVSDWIQFEEIEDLEDRAQSWFETEKQTAEIEGIATEDTPQE
TQQPSVPTGSDEDSRCQVCHDAFEQFYNEEKEEWHLRPAISYEGKNFHPLCLEDYKEKSL
VRALEKTALALEETIGEMEDEKKSGIEESIIEEIKIQDSKIESDIVEQSIAEREDIVLTE
EQKTPEIEDSEDHLSLENIENQQQDEKMEDEKIENTDNDKLNIEELEKIDIHLRTDEEKS
QSEVVESNSFENIKIKEEPLDEIEEQIEEQFDFTNVDIKEEPTEPEPDPEESIVSEHATV
DTTYAAVKSSIDGNVELDSTPATLPTAPSRIKINITKPLNTSKEPEEPKEKQIVEPQIEE
HTEPLVPASIKPTLLGRKLSTLPPVEKGQELSGLCSIM
NT seq
5697 nt
NT seq
+upstream
nt +downstream
nt
atgacatcagcaaaatctaaagaaatagccgatgagtacatctcatcgctgtctgatctt
acgattaacagcaagccgcttatcaatatgcttactatgctggcagaggataacgttgaa
catgcacctgcaatcgtccaagctgtcgaaaatcatctacaaaaggtgaggagtgatatc
aaactacctgtactttacctcatcgattctattgtgaagaatgttaatggaacttatcta
aatctctttacccaaaatattgtgaatacattttgtggagtttttgaaaaggtggatgaa
aatactagagccagtatgtggaagttgcggcaaacatggaatgatgtatttcctgcaaag
aagttattttcattagatgtacgagtacaaagtattgatcctgcttggccaatcactgcc
tctcctacaagtatatcgtcgggctccatccatgtcaatcctcgttttctctctatgcct
caacaaacagcaacttcaatagttcaaccaattgtaccgccagttaagttaccaccaggt
gatccagtatctactacagaagctgtaatgcgagagcagctattaaagaagcaaagagaa
ttgttagaattacaaaagaaaaaaattgaactggaattgcttcaagccaaagctagtttg
gaacaacagcagaggcaactcgataaacaagctggaagcttaaagacagacatagttgtg
ccatcaacaacaactgttcgtccaagtacagaaagtactactcaaggaaagcctacaaca
cccgttgtatcgagtccaacaccaaaacaggttacaaaacagtttccagctgcagctgca
tcattgttgaaaaatgcaggcacgaataatggtcctcgaattgcaccagcaagtagtata
gcagtagcgtctgctaggccaatgtcacgtgatcctcgattgaagactgcatccgttcag
gaggtgacaactacggatccacgacaacgacagagtacgaccggccaaaaggagatccgg
agtggtgaaggccaaacgcagttagcgccaaatataaacactgtactttcagatcaatta
aaacaccaattacttccgaaacaggctgtgactagcactatcaacaagcctccgacaaat
cttgccggctccgatacacaaacgataaacgctagtaataacactaatgctaatacgaac
ctcaacaataataataaaagtttcagtggtaacgcaaataaagatgctgtctcgcatcga
acaagtcaaaagaaagaccctcgatcgtctagtaataatagcaataacctaaacagtaat
tgctccaaaagtgcccaaagttcgtcactcaatagcagttcttcgacattgtcaggaagt
aataggggaggtggaggaagtgacatcaagacaaaagatgtgaagagtttaagttcacga
agctcttcatcgtctacaattgataaatcttccacttcctctaaatcctcatatagaaaa
ataggtaacaaatcgcgttctaaacaacctcaatcatctccgagtaaggtgccgaaagtc
gacagagattccagtccagttaggtctaaatcacgtgaaaaagacagtggagacagttca
ccatcttcgcgtacctctcctcagtcctctttccaaacttctaaaaatcgcaagaagata
aaatcgagaaagcgcagtccaagttccccatatagaataccccggcgtaatgacacaaaa
tccaattcaagtttaagcagttcaggtggtgttactgaggaggaacaatccggttcatta
atagtatctcctcctcacccacccacatttaaagaaatcaggccaaatgctagacaaaga
aattatgtacgtcgaaataaggatgatagtcttagtccagaacgttcacctgttaattct
gggaacgttcaagttaccacagaaccaacactggagtcatccagtaaagacgaagacctc
agagctacattgccccttcctggtactaataccaccgtagctgaaaagaaagaagatcta
gatcttcgtgtcttgccaccagttaatacaaataaaagacaaagtactgaacacttggaa
ccaacagcgattaaaaagacaaaagcagaaaaatttgatgcattatttgggaatgaagat
gttgatttgagaacattgacgcatcctaaggctggtcgaccgccaacaccaccgccacca
gtgatttccggagaagatggcaaagatagttgggctaaattaaagactccttcaaagaat
gacagagaaaaacaagtgaataataatgatgacaaacgcgatagagatcgtaacagagat
agattaggtcgtctcagactttataataaattaccggacgatccaaaagacagacgaaga
acattgtctaatgaggatcaggactctcgacctggtcgaagaggacgcgaaaatgataaa
cctgaaagaaacgaagatcgaaatattgaaataataatgaaacaagctgctgaacaactt
aatcaaggatcgattacaaaaacacaatataatacattaatacaagaggttttacatatg
agtgaagatcgaaaattgagagcagcgcagcgtaaagaaaaagaggcaggttctatagta
tgggaaaaaggagtatcgttggatattaatggtccggttgatcgtacacctaattttagc
ccatctggtgaaaaagaagtcataaggagtaaggatcatcctattcctagaaatccaaat
ggtccacgatggcaaagccagccgtggcagcaaccaggtccatgggcacacccaccaggt
cctccttatggtggccctcaagcacactttaatgcagattttagacctgtaggaccttgg
caaaatccaagacattttggcccaatgaggccagattatcagtatcatggtggttataat
cacaatattggtccaaatccccgattaggacctggtatgatgggtcctataggtcctaat
ggtcctattatatctaatctcttaccaaatggaccaattggtccaataggtatgccaaat
ccttccttgtcattatcaggtatgaatggacctggaataataatgaataatggaccaatt
ccaagtttaatgtcaaatccaaacataccatctttgagtactggaagaaacgtttcacca
aatgctacagcaacaaaatacgatcttgaagatggagatcaaaattataatgctgcactg
ccaaaaaatcaaggtcctcatagtcgtgaactacctccgccagattcgcaattattagat
gaaattgcccgagatactatgaagtctataaatattgataatatcccaagagaaatcaga
tattatggtcaaactggtgtagtttttatgaattgggatgatccgagagaaattggattc
caggatggtgtaaggcgaattttaatagatgataaggatactataacatgtgcattcaat
gatcagtataaagaattcatgtacgatggagaagttcacagaataaaactgggtgctcca
acaagggaattatatgttgatgatcgttggtatgaatgttattttggtggaatgcctgta
actatagagcttggtggtaaaaaagtaaatataaaattagagggccctccgccacaagta
aagatcggtactgttaaacgaacagatttagtagttgctaaaattaatctcataattaat
gctagaaatatggtgcctgtctttttagatgcaaaaccacaaatatttgaaattgaaggc
aagcctcatacattagaattcatagacgctttgcaaacggtacttttgaatggtcgaccg
tttaaagttgaatttggaggattacctaaacccatcattgtaagagataaaaaacatttc
ataagattttcggtattaccacgaggtatacgtgctggatacgttaagatagcaggaatg
agaggtgaagaacctattgaagcaccatcaactccacctttattaaatcaaaaacctaaa
attgatactacacctactcctactcagcttccatctatagaacaggaatccacatcccaa
gatggttcagatctcatttctacaccaaaaccagatttacaattggatattctatcttct
gttctaccatctgcaatggcaccatcgtctggtttgtcttatcaggcagaaccagtcgaa
aatccacctacgtcaactccagctttatcattgccattaaatatgaatgaattattccag
cgtttagtagagactggcattgtaccaaatcttacagagaaaaagaaacaggaagaggaa
gagaaaaaggatccagaaattattcctgtttcttttgataagccagagacgcttaaagtg
aagcaaccagctatagctgctgctttgtacagtggaatgcagtgtagttcgtgcggtgca
agatttgcacctgaattagcaacgcgatatagtcatcatttagattggcattttagacaa
aacagacgtgaacgagattctgcaaggaaagcacattctcgaccatggtattatgacgtt
agcgattggatacaattcgaggaaatcgaagatcttgaagatagagctcaaagttggttt
gaaacagaaaaacaaacagctgaaatagaaggtattgctactgaggatacgccacaagaa
acacaacaaccaagtgttcctactggttctgatgaagattcgagatgtcaagtgtgtcat
gatgcttttgaacaattttacaatgaggaaaaggaagaatggcatttaaggccagcaatt
agttatgaagggaaaaacttccatccactatgtcttgaagattataaggaaaaaagtctt
gtgagagctctggaaaaaactgctttggcacttgaggaaacgatcggagaaatggaagat
gaaaagaaaagtggtatagaagaatctattatagaagaaattaaaattcaagattcaaaa
atagaaagtgacattgttgaacaatcgattgctgaacgagaggatatagtgcttacagaa
gaacaaaaaactcctgaaattgaagattcagaagatcacctgagtttagaaaacatagaa
aatcaacagcaagatgaaaaaatggaggatgaaaagatcgaaaatacagacaatgacaaa
ttaaacatagaagaattagaaaaaatagatatacatttacgaacggacgaagaaaaatct
caaagtgaagtagtcgaaagtaattcgttcgaaaatataaaaatcaaagaagaaccttta
gatgaaatcgaggaacaaatagaagaacaatttgactttactaatgtagatattaaagaa
gaacctacagaacctgagccagatccagaagagagcatagtaagtgagcacgcaacagta
gatacaacatatgcagctgtgaaaagttctattgatggaaatgtggaattggattctacc
ccagcgacattaccaacagccccatcccgtattaaaattaatattacgaagcccttaaat
actagcaaggaacctgaagaaccaaaggagaaacaaattgtagagcctcaaattgaagaa
catacagagcctttagtgcctgcttctatcaaacccactttgctgggtagaaaattatct
accttacctcccgtagaaaagggacaagaattatctggactctgttcaataatgtaa
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integrated database retrieval system
