KEGG T01084: 100245652

Vitis vinifera (wine grape): 100245652

Entry

100245652         CDS       T01084

Name

(RefSeq) ATP-dependent DNA helicase Q-like 4A isoform X1

K10901

bloom syndrome protein [EC:5.6.2.4]

Organism

vvi Vitis vinifera (wine grape)

Pathway

vvi03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:vvi00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    100245652
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vvi03032]
    100245652
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100245652
Enzymes [BR:vvi01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     100245652
DNA replication proteins [BR:vvi03032]
Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    100245652
DNA repair and recombination proteins [BR:vvi03400]
Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     100245652
    Bloom's syndrome complex (BTR)
     100245652
   FA (Fanconi anemia) pathway
     100245652

SSDB

Motif

Pfam:

DEAD Helicase_C RQC RecQ_Zn_bind HRDC ResIII CIP2A_N HHH

Other DBs

NCBI-GeneID:

100245652

NCBI-ProteinID:

XP_019079316

LinkDB

Position

12:join(21710772..21710794,21710903..21711076,21726009..21726066,21726412..21726840,21727290..21727463,21727535..21727662,21727927..21728302,21728384..21728515,21728870..21728956,21729059..21729180,21738873..21738993,21739085..21739236,21739303..21739438,21740202..21740325,21740406..21740476,21740615..21740683,21740811..21740939,21741027..21741185,21741343..21741423,21741513..21741674,21741823..21741878,21742379..21742508,21742605..21742699,21742842..21742919,21742998..21743438,21743664..21743745)

AA seq 1262 aa
MTKEKHMSGSNLGEGFKSDEKCPKVNWSQHANAHDNFLSPNKFLGSNFLFSLLTQRPCTN
KEMGVRPMICQIQHIQRLQSLQVEKAWGALSSLKLSSRNYSKPGKMAPLLKDASVEFPRD
VRKCNLQSSHNTNNQYLEHNLPHQNLGETNSSYSETASCRGNSFRSGSACAENAGREGGQ
NETKPSMLYNSHIQVVGQSSGTCNVHTGQVKELVGAFPNGTDDDDILEDIDVDQIVMEHY
QSTCTPQPSISKLPPVTPTLSTVNIAKHEETFLPLELCSNCSHGFKLGLCPEAANHLQEL
KDMLIVISNELLDNVDLTSVQVEKLRQDRLYLNKQIQQLEIHLHSVSVDEERKNSNFSAS
TTTPWAQFQTPPATAVGIDPMRFDAQVHLRNEPGNYEKWNTSSVSFSSIDRFGVTPYPLE
REPYIPKLIEVNYIEGSSDKKWSSGNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSG
YDVFVLMPTGGGKSLTYQLPALISPGITLVISPLVSLIQDQIMHLLQANIPAAYLSASME
WNEQQEILRELSSCKYKLLYATPEKVAKSDVLMRNLDNLHARELLSRIVIDEAHCVSQWG
HDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWY
SVLPKTRKCLDDIDKFIRENHFDECGIIYCLSRLDCEKVAERLQECGHKAAFYHGSMDPA
RRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQR
SSCVLYYSYSDYIRVKHMITQGVVEQSPLASGQNRSNMASSGRILETNTENLLRMVSYCE
NDVDCRRLLQLVHFGEKFDSAHCKKTCDNCLKIKSFVEKDVTEIAKQLVELVKLTREQFS
SSHILEVYRGSLSQYVKKHRHETLGLHAAGKHLAKGEASRILRHLVTEDFLMEDVKKSDI
YGSVSSVLKVNESKVYKLFSGGQKIILRFPSSAKSSKLSNFEATPAKGSLTSGKLSPPRI
ETPAHLPEVDLNLSAKLYSALRILRTVLVKEAGEGVMAYHIFGNATLQQISKRIPRTKEE
LLEVNGIGKAKISKYGDRVLETIESTIKEYYKTDKNSSSSNDSTDTIKRRRESAKVLDAN
PEDDDFTKSTDRSRGRAMKRHNKGGEANNTRETDYYNQCIDDDLDFDDANCDVAINGSAP
KVDRDGARRTLPSWSTPSNKGHDQHLNMFQEYSFKGTHIKAGKMKDVGQFAVAIEFVLVF
LL

NT seq 3789 nt +upstreamnt +downstreamnt
atgacaaaggaaaagcacatgagtggtagcaatttgggtgaaggttttaagtctgatgaa
aaatgccctaaagttaattggtctcaacatgccaatgcacacgataatttcttaagccca
aataagttcttgggttcaaattttcttttctccttattgacacagagaccttgtaccaac
aaagaaatgggtgtgaggccgatgatatgtcaaattcagcatattcaaagattgcagagt
ctgcaagttgaaaaggcatggggtgccctttccagtcttaagctgtcctccaggaattat
tcaaaacctggaaaaatggcaccattacttaaggatgctagtgttgaatttccccgggat
gttagaaaatgtaatttacagagctcacacaacacgaataatcaatatttggaacataat
ctaccacatcaaaatttgggtgaaaccaattccagctatagtgagactgcaagttgcagg
ggcaactcttttcggtcaggtagtgcttgtgctgaaaatgctggacgggaaggtgggcaa
aatgagaccaaaccatcaatgctttataattctcatatacaagttgtgggccaatcatct
ggaacatgtaatgtgcacactggccaagtgaaagagttggtgggtgcttttcctaatggc
acagatgacgatgacatacttgaggatattgatgtggaccaaatagttatggagcactac
caatcaacttgcacacctcaaccatcaatttctaagcttccacctgttactccaacttta
agcacagttaatatcgcaaaacatgaggaaacatttctccctttggaattgtgctcaaac
tgcagtcatggctttaagctagggctttgcccagaagctgcaaatcatttacaggaattg
aaggacatgctaattgtcatatcaaatgaacttctcgacaatgttgaccttacatcagtg
caggtagagaagcttcgccaagatagattgtacctgaataagcaaattcagcagcttgag
atacatctacattcggtttctgttgatgaagaaaggaaaaattcaaatttttctgcatcc
accaccactccttgggctcaatttcaaacccctccagcaactgcagttgggattgatccc
atgagatttgatgcccaggtgcatttacgtaatgagccaggcaactatgagaagtggaat
acatcatcagtttcgttctcttctatagataggtttggtgttacaccatatcctctagag
agggaaccatatatcccaaagttaatcgaagtcaactatattgaaggctcaagtgacaag
aagtggagtagtgggaacttcccatggacaaagaagctggaggccaacaacaagaaagtt
tttggaaaccactcattccgccccaatcaaagggaggtcatcaatgctacaatgagtgga
tatgatgtttttgttctaatgcctactggaggaggaaagagtctgacatatcagctgcct
gctcttatttctccagggattaccctggtaatttctcctcttgtctcactaattcaagat
caaataatgcatctattgcaggcaaacatacctgctgcttacttaagtgccagcatggag
tggaacgaacaacaggagatccttagagaactcagctcttgcaaatacaagctattgtat
gcaactccagagaaagttgctaaaagtgatgtcctaatgcgaaacttggacaatttgcat
gctcgtgaattgctttctaggattgttattgatgaagcccattgtgtaagtcagtggggg
catgacttccgaccagattatcagggtcttggtatcttgaaacaaaaattcccaaatact
ccagttttagctttaactgctactgcaacagccagtgtaaaagaagatgtagtgcaagcc
cttggtcttgttaattgcattatttttcggcaaagtttcaaccgcccaaatttatggtat
tctgttctccccaagacaagaaagtgtctggatgacattgacaagttcattagagaaaat
cattttgatgaatgtggaattatttattgtctttcaagattggactgtgaaaaagttgct
gaaaggttacaggaatgtggacacaaagcagcattttatcatggttccatggatccagct
cgacgtgccttcgttcagaagcaatggagtaaagatgagattaatataatttgcgcaact
gtggcttttggaatgggtatcaacaaaccagatgtccgctttgtcattcatcattctctt
ccaaaatcaattgaagggtatcatcaggagtgtggccgtgctggtagagatggtcagcgt
tcatcttgtgtgctgtattatagttacagtgattatatccgagtgaagcatatgatcact
caaggagtagtagagcaaagtccattggcatctggacaaaatcgttcaaatatggcgagt
tcaggaaggatattggaaaccaatactgaaaatcttctgcgcatggtaagttattgtgaa
aatgatgttgattgccggcgtctcctacaactcgtacattttggagaaaaatttgattcg
gcccactgcaaaaagacttgtgacaattgtttgaagattaaaagttttgttgagaaggat
gttaccgagattgcaaaacagctggtcgagttggtgaagttaacacgagagcagttctca
tcatctcatatcttggaagtgtataggggttccttaagccaatatgttaagaaacacaga
catgaaactttgggcctgcatgcggctgggaaacatctagccaagggtgaagcatctcga
attttgcgccatcttgttactgaggatttccttatggaggatgttaagaaaagcgatatc
tatgggtctgtgtcatcagtattgaaggtgaacgaatccaaggtttacaagctcttctct
ggtgggcagaaaattatattaaggttcccttcctcggcaaaatcatctaaactgagcaat
tttgaagcaactccagcgaaaggctctcttacatcaggaaagctaagtcctccacgaata
gaaacccctgctcatctcccagaggtggacttgaatctgtcagcaaaactttattctgct
cttcggatacttcgaactgttcttgttaaagaagctggggagggggtcatggcataccac
atatttggaaatgccacattacagcaaataagcaagagaatacccagaaccaaggaagaa
ctccttgaagtcaatggcattggcaaggcaaagataagcaagtacggagatagagtgctg
gaaaccattgagtcaaccatcaaggaatactacaagacggacaaaaatagcagcagtagc
aatgacagtactgataccatcaagaggagaagagagtctgctaaggttttagatgcaaat
ccggaggatgatgacttcaccaaaagcaccgatcgatccaggggaagggctatgaaaagg
cacaacaaaggcggtgaggctaacaataccagagagacagactattacaaccagtgcata
gatgatgacttagactttgatgacgccaattgtgatgttgccattaacgggtcagctcca
aaggttgatagggatggtgcaagaagaacactgccttcatggtcaacaccgagcaataag
ggtcacgaccaacatctcaatatgttccaagaatattccttcaaggggacacacataaaa
gcagggaagatgaaggatgttgggcaatttgctgtggctatagagtttgtattagtgttt
ctcttataa

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